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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2x3fAPCPantothenate synthetase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2x3fAPCPantothenate synthetase/1.000
1n2hPAJPantothenate synthetase6.3.2.10.536
3ioeA7DPantothenate synthetase6.3.2.10.532
1n2iPAJPantothenate synthetase6.3.2.10.531
3ivxFG6Pantothenate synthetase6.3.2.10.524
1n2jPAFPantothenate synthetase6.3.2.10.519
3cow52HPantothenate synthetase6.3.2.10.504
3ivgFG5Pantothenate synthetase6.3.2.10.504
3coy53HPantothenate synthetase6.3.2.10.502
1n2eAPCPantothenate synthetase6.3.2.10.500
3iocA5DPantothenate synthetase6.3.2.10.493
1n2gAPCPantothenate synthetase6.3.2.10.489
3isjA8DPantothenate synthetase6.3.2.10.489
3coz54HPantothenate synthetase6.3.2.10.486
3iodA6DPantothenate synthetase6.3.2.10.483
3iobA4DPantothenate synthetase6.3.2.10.471
4ddhMS0Pantothenate synthetase6.3.2.10.470
1n2bPAFPantothenate synthetase6.3.2.10.468
3imgBZ3Pantothenate synthetase6.3.2.10.459
3imeBZ2Pantothenate synthetase6.3.2.10.454
3imgBZ2Pantothenate synthetase6.3.2.10.441