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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wsaMYAGlycylpeptide N-tetradecanoyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2wsaMYAGlycylpeptide N-tetradecanoyltransferase/1.000
4a30MYAGlycylpeptide N-tetradecanoyltransferase/0.746
5ag6MYAGlycylpeptide N-tetradecanoyltransferase/0.693
4ucnMYAGlycylpeptide N-tetradecanoyltransferase/0.641
4cgpMYAGlycylpeptide N-tetradecanoyltransferase/0.636
4bbhNHWGlycylpeptide N-tetradecanoyltransferase/0.602
4b11NHWGlycylpeptide N-tetradecanoyltransferase/0.591
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.572
2yncYNCGlycylpeptide N-tetradecanoyltransferase/0.565
4c68NHWGlycylpeptide N-tetradecanoyltransferase/0.562
2yneNHWGlycylpeptide N-tetradecanoyltransferase/0.545
4a95NHWGlycylpeptide N-tetradecanoyltransferase/0.509
5a28MYAGlycylpeptide N-tetradecanoyltransferase/0.502
4c2zMYAGlycylpeptide N-tetradecanoyltransferase 1/0.478
4c2yMYAGlycylpeptide N-tetradecanoyltransferase 1/0.459
1iidNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.446