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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wonZZEGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2wonZZEGag-Pol polyprotein2.7.7.491.000
3c6uM22Gag-Pol polyprotein2.7.7.490.682
3c6tM14Gag-Pol polyprotein2.7.7.490.647
4h4o506Gag-Pol polyprotein2.7.7.490.646
3t1a5MAGag-Pol polyprotein2.7.7.490.633
4rw6494Gag-Pol polyprotein2.7.7.490.632
3dyaPZLGag-Pol polyprotein2.7.7.490.617
4h4m494Gag-Pol polyprotein2.7.7.490.613
4rw4494Gag-Pol polyprotein2.7.7.490.608
3lalKRVGag-Pol polyprotein2.7.7.490.607
3dokGWJPol protein/0.600
4mfb29TGag-Pol polyprotein2.7.7.490.590
3drpR8EGag-Pol polyprotein2.7.7.490.589
3drrR8EGag-Pol polyprotein2.7.7.490.588
2be2R22Gag-Pol polyprotein2.7.7.490.573
3t195MAGag-Pol polyprotein2.7.7.490.565
3lakKR1Gag-Pol polyprotein2.7.7.490.561
3dmjGWEPol protein/0.559
3dlgGWEGag-Pol polyprotein2.7.7.490.556
2b5j3ACGag-Pol polyprotein2.7.7.490.552
4lsl1YQGag-Pol polyprotein2.7.7.490.552
2ynhEURGag-Pol polyprotein2.7.7.490.539
1c1bGCAGag-Pol polyprotein2.7.7.490.515
1c1c612Gag-Pol polyprotein2.7.7.490.510
3tamM06Gag-Pol polyprotein2.7.7.490.502
1rt1MKCGag-Pol polyprotein2.7.7.490.500
3dleGFAGag-Pol polyprotein2.7.7.490.493
4ifvT27Gag-Pol polyprotein2.7.7.490.477
1rt4UC1Gag-Pol polyprotein2.7.7.490.475
1rt7UC4Gag-Pol polyprotein2.7.7.490.475
2opsHBQGag-Pol polyprotein2.7.7.490.475
1rtiHEFGag-Pol polyprotein2.7.7.490.472
1tl3H20Gag-Pol polyprotein2.7.7.490.472
4i2pG73Gag-Pol polyprotein2.7.7.490.472
3qlhT27Gag-Pol polyprotein2.7.7.490.463
1jlcFTCGag-Pol polyprotein2.7.7.490.458
1tktH12Gag-Pol polyprotein2.7.7.490.451
4g1qT27Gag-Pol polyprotein2.7.7.490.445
4id5T27Gag-Pol polyprotein2.7.7.490.445
2z3uCRRCytochrome P450/0.444
3rk708ZCyclin-dependent kinase 22.7.11.220.444
3irxUDRGag-Pol polyprotein2.7.7.490.443
5jtbZMAAdenosine receptor A2a/0.442
3bgrT27Gag-Pol polyprotein2.7.7.490.441