Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
2wo8 | 077 | Macrophage metalloelastase | 3.4.24.65 |
PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
---|---|---|---|---|---|
2wo8 | 077 | Macrophage metalloelastase | 3.4.24.65 | 1.000 | |
3ljg | EEF | Macrophage metalloelastase | 3.4.24.65 | 0.640 | |
1utt | CP8 | Macrophage metalloelastase | 3.4.24.65 | 0.618 | |
4gr8 | R4C | Macrophage metalloelastase | 3.4.24.65 | 0.614 | |
4h76 | 10B | Macrophage metalloelastase | 3.4.24.65 | 0.608 | |
4gr3 | R45 | Macrophage metalloelastase | 3.4.24.65 | 0.597 | |
2woa | 576 | Macrophage metalloelastase | 3.4.24.65 | 0.591 | |
4guy | KLJ | Macrophage metalloelastase | 3.4.24.65 | 0.583 | |
1hy7 | MBS | Stromelysin-1 | 3.4.24.17 | 0.582 | |
3tsk | QEG | Macrophage metalloelastase | 3.4.24.65 | 0.579 | |
2w0d | CGS | Macrophage metalloelastase | 3.4.24.65 | 0.577 | |
4gql | R47 | Macrophage metalloelastase | 3.4.24.65 | 0.577 | |
2oxw | ILE_ALA_GLY | Macrophage metalloelastase | 3.4.24.65 | 0.576 | |
2ovx | 4MR | Matrix metalloproteinase-9 | 3.4.24.35 | 0.573 | |
4g9l | NGH | Stromelysin-1 | 3.4.24.17 | 0.567 | |
2wo9 | 068 | Macrophage metalloelastase | 3.4.24.65 | 0.562 | |
1caq | DPS | Stromelysin-1 | 3.4.24.17 | 0.558 | |
4i03 | L88 | Macrophage metalloelastase | 3.4.24.65 | 0.558 | |
3kry | 3KR | Collagenase 3 | 3.4.24 | 0.556 | |
2hu6 | 37A | Macrophage metalloelastase | 3.4.24.65 | 0.555 | |
1xur | PB5 | Collagenase 3 | 3.4.24 | 0.549 | |
1b8y | IN7 | Stromelysin-1 | 3.4.24.17 | 0.546 | |
3lil | EEA | Macrophage metalloelastase | 3.4.24.65 | 0.546 | |
3kec | 3KE | Collagenase 3 | 3.4.24 | 0.543 | |
3lik | EEG | Macrophage metalloelastase | 3.4.24.65 | 0.542 | |
3i7g | 732 | Collagenase 3 | 3.4.24 | 0.540 | |
4a7b | 3W4 | Collagenase 3 | 3.4.24 | 0.539 | |
2ow1 | 7MR | Matrix metalloproteinase-9 | 3.4.24.35 | 0.538 | |
1ciz | DPS | Stromelysin-1 | 3.4.24.17 | 0.537 | |
4a7b | 3W5 | Collagenase 3 | 3.4.24 | 0.537 | |
3ts4 | EEG | Macrophage metalloelastase | 3.4.24.65 | 0.536 | |
4ja1 | NGH | Stromelysin-1 | 3.4.24.17 | 0.536 | |
1sln | INH | Stromelysin-1 | 3.4.24.17 | 0.533 | |
4gr0 | R4B | Macrophage metalloelastase | 3.4.24.65 | 0.531 | |
1d7x | SPC | Stromelysin-1 | 3.4.24.17 | 0.528 | |
2ow9 | SP6 | Collagenase 3 | 3.4.24 | 0.528 | |
1xuc | PB3 | Collagenase 3 | 3.4.24 | 0.527 | |
3i7i | 518 | Collagenase 3 | 3.4.24 | 0.527 | |
1d8f | SPI | Stromelysin-1 | 3.4.24.17 | 0.526 | |
1g05 | BBH | Stromelysin-1 | 3.4.24.17 | 0.525 | |
3o2x | 3O2 | Collagenase 3 | 3.4.24 | 0.525 | |
1zvx | FIN | Neutrophil collagenase | 3.4.24.34 | 0.520 | |
4dpe | NGH | Stromelysin-1 | 3.4.24.17 | 0.519 | |
2ow0 | 6MR | Matrix metalloproteinase-9 | 3.4.24.35 | 0.518 | |
2yig | 5EL | Collagenase 3 | 3.4.24 | 0.518 | |
1ztq | 033 | Collagenase 3 | 3.4.24 | 0.512 | |
1bqo | N25 | Stromelysin-1 | 3.4.24.17 | 0.511 | |
3kek | 3EK | Collagenase 3 | 3.4.24 | 0.510 | |
3zxh | E41 | Collagenase 3 | 3.4.24 | 0.509 | |
3kej | 3EJ | Collagenase 3 | 3.4.24 | 0.507 | |
1you | PFD | Collagenase 3 | 3.4.24 | 0.502 | |
1c8t | TR1 | Stromelysin-1 | 3.4.24.17 | 0.500 | |
2woa | 023 | Macrophage metalloelastase | 3.4.24.65 | 0.497 | |
2ovz | 5MR | Matrix metalloproteinase-9 | 3.4.24.35 | 0.496 | |
2wo8 | 023 | Macrophage metalloelastase | 3.4.24.65 | 0.495 | |
1hv5 | RXP | Stromelysin-3 | 3.4.24 | 0.494 | |
2d1n | FA4 | Collagenase 3 | 3.4.24 | 0.494 | |
1biw | S80 | Stromelysin-1 | 3.4.24.17 | 0.491 | |
2ow2 | 8MR | Matrix metalloproteinase-9 | 3.4.24.35 | 0.487 | |
2wo9 | 023 | Macrophage metalloelastase | 3.4.24.65 | 0.486 | |
1g49 | 111 | Stromelysin-1 | 3.4.24.17 | 0.479 | |
1d8m | BBH | Stromelysin-1 | 3.4.24.17 | 0.476 | |
1mnc | PLH | Neutrophil collagenase | 3.4.24.34 | 0.474 | |
1zs0 | EIN | Neutrophil collagenase | 3.4.24.34 | 0.474 | |
1gkc | NFH | Matrix metalloproteinase-9 | 3.4.24.35 | 0.473 | |
1b3d | S27 | Stromelysin-1 | 3.4.24.17 | 0.469 | |
1d5j | MM3 | Stromelysin-1 | 3.4.24.17 | 0.466 | |
2yq9 | 2AM | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.448 | |
2dgn | DOI | Adenylosuccinate synthetase isozyme 1 | / | 0.442 | |
2d1o | FA4 | Stromelysin-1 | 3.4.24.17 | 0.440 |