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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2w4jADPDeath-associated protein kinase 12.7.11.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2w4jADPDeath-associated protein kinase 12.7.11.11.000
1ig1ANPDeath-associated protein kinase 12.7.11.10.701
1jklANPDeath-associated protein kinase 12.7.11.10.629
3gu7ADPDeath-associated protein kinase 12.7.11.10.532
1jkkANPDeath-associated protein kinase 12.7.11.10.528
5av2KMPDeath-associated protein kinase 12.7.11.10.487
5av3KMPDeath-associated protein kinase 12.7.11.10.461
4ysjADPCalmodulin-like domain protein kinase/0.456
4e6q0NVTyrosine-protein kinase JAK2/0.442
4qnyANPMitogen activated protein kinase, putative/0.442