Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vp2DGTDeoxynucleoside kinase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2vp2DGTDeoxynucleoside kinase/1.000
2vp4DCPDeoxynucleoside kinase/0.616
2jcsTTPDeoxynucleoside kinase/0.610
1oe0TTPDeoxynucleoside kinase/0.559
2vp0TTPDeoxynucleoside kinase/0.544
1zm7TTPDeoxynucleoside kinase/0.537
3vtkADPThymidine kinase/0.457
3qeoLLTDeoxycytidine kinase2.7.1.740.443
3qen5BTDeoxycytidine kinase2.7.1.740.441
1p7cT5AThymidine kinase/0.440
4qbfAP5Adenylate kinase/0.440