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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2v58LZJBiotin carboxylase6.3.4.14

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2v58LZJBiotin carboxylase6.3.4.141.000
2v5aLZLBiotin carboxylase6.3.4.140.589
2v59LZKBiotin carboxylase6.3.4.140.550
3jzfJZKBiotin carboxylase6.3.4.140.491
2w6zL21Biotin carboxylase6.3.4.140.489
4mv8ACPBiotin carboxylase6.3.4.140.483
2vr1ATFBiotin carboxylase6.3.4.140.467
2w6pOA4Biotin carboxylase6.3.4.140.466
2w71L23Biotin carboxylase6.3.4.140.466
4mv1ADPBiotin carboxylase6.3.4.140.459
2w6nOA2Biotin carboxylase6.3.4.140.457