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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2rm2W43Genome polyprotein

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2rm2W43Genome polyprotein/1.000
2rs1W84Genome polyprotein/0.828
2rr1W8RGenome polyprotein/0.788
2r04W71Genome polyprotein/0.777
1hrvSDZGenome polyprotein/0.682
3gw9VNILanosterol 14-alpha-demethylase/0.440