Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2r6jNDPEugenol synthase 11.1.1.318

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2r6jNDPEugenol synthase 11.1.1.3181.000
2qw8NAPEugenol synthase 11.1.1.3180.651
2qx7NAPEugenol synthase 11.1.1.3180.630
3c3xNAPEugenol synthase 11.1.1.3180.573
3c1oNAPEugenol synthase/0.557
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.451
1s7gNADNAD-dependent protein deacylase 2/0.445
1fmjRTLRetinol dehydratase/0.441
3tqxPLP2-amino-3-ketobutyrate coenzyme A ligase/0.441