sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2qwq	ADP	Heat shock cognate 71 kDa protein

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
2qwq	ADP	Heat shock cognate 71 kDa protein	/	1.000
2qwr	ANP	Heat shock cognate 71 kDa protein	/	0.867
1atr	ADP	Heat shock cognate 71 kDa protein	/	0.514
1ngh	ATP	Heat shock cognate 71 kDa protein	/	0.501
2qwl	ADP	Heat shock cognate 71 kDa protein	/	0.501
1ngi	ANP	Heat shock cognate 71 kDa protein	/	0.499
2qwn	ADP	Heat shock cognate 71 kDa protein	/	0.495
1ats	ADP	Heat shock cognate 71 kDa protein	/	0.494
1nge	ATP	Heat shock cognate 71 kDa protein	/	0.485
1ngc	ADP	Heat shock cognate 71 kDa protein	/	0.482
3hsc	ADP	Heat shock cognate 71 kDa protein	/	0.474
1ngb	ADP	Heat shock cognate 71 kDa protein	/	0.466
3ldl	ATP	78 kDa glucose-regulated protein	/	0.464