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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.641
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.634
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.616
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.613
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.607
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.595
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.595
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.591
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.589
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.585
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.570
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.570
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.567
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.566
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.565
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.551
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.550
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.544
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.543
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.539
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.538
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.535
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.533
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.532
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.530
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.523
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.517
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.505
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.500
4qofFMNRibosyldihydronicotinamide dehydrogenase [quinone]/0.499
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.492
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.490
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.472
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.469