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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q6cHR13-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.34

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2q6cHR13-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.341.000
3cd57HI3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.340.554
2q6bHR23-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.340.553
1dq9HMG3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.340.533
1dq8COA3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.340.492
1fm7DFVChalcone--flavonone isomerase 15.5.1.60.469
4uxxACPDiacylglycerol kinase2.7.1.1070.462
1t02LVA3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.880.461
1k6pXN3Gag-Pol polyprotein3.4.23.160.458
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.456
4i4e1BQFocal adhesion kinase 12.7.10.20.455
1s9jBBMDual specificity mitogen-activated protein kinase kinase 12.7.12.20.452
4gyiADPUncharacterized protein/0.451
4l425FIRibosomal protein S6 kinase beta-12.7.11.10.451
2excJNKMitogen-activated protein kinase 102.7.11.240.450
3opdHIEHeat shock protein 83/0.450
1k6tXN1Gag-Pol polyprotein3.4.23.160.447
2bdf24AProto-oncogene tyrosine-protein kinase Src2.7.10.20.447
1omoNADAlanine dehydrogenase/0.444
2pwlACPFibroblast growth factor receptor 2/0.443
3tm5SFGUncharacterized protein/0.443
3ttjJBIMitogen-activated protein kinase 102.7.11.240.443
1ao0ADPAmidophosphoribosyltransferase/0.441
1qz5ATPActin, alpha skeletal muscle/0.441
2j7t274Serine/threonine-protein kinase 102.7.11.10.441
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.441
3dpd41APhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.441
4an35Y0Dual specificity mitogen-activated protein kinase kinase 12.7.12.20.441
2bfyH1NAurora kinase B-A2.7.11.10.440
2brbPFQSerine/threonine-protein kinase Chk12.7.11.10.440
2xh9J01Uncharacterized protein/0.440
3cgcFADCoenzyme A disulfide reductase/0.440
4wq5ATPtRNA N6-adenosine threonylcarbamoyltransferase/0.440