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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q3rFMN12-oxophytodienoate reductase 11.3.1.42

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2q3rFMN12-oxophytodienoate reductase 11.3.1.421.000
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.618
1icqFMN12-oxophytodienoate reductase 11.3.1.420.593
1icpFMN12-oxophytodienoate reductase 11.3.1.420.592
1icsFMN12-oxophytodienoate reductase 11.3.1.420.563
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.563
4tmbFMNOld yellow enzyme/0.554
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.538
3p74FMNPentaerythritol tetranitrate reductase/0.531
2abbFMNPentaerythritol tetranitrate reductase/0.528
3f03FMNPentaerythritol tetranitrate reductase/0.528
3p82FMNPentaerythritol tetranitrate reductase/0.524
1h50FMNPentaerythritol tetranitrate reductase/0.522
1vyrFMNPentaerythritol tetranitrate reductase/0.520
4rnuFMNNADPH dehydrogenase 11.6.99.10.519
3p62FMNPentaerythritol tetranitrate reductase/0.516
1bwlFMNNADPH dehydrogenase 11.6.99.10.514
3p67FMNPentaerythritol tetranitrate reductase/0.506
1h63FMNPentaerythritol tetranitrate reductase/0.505
4jicFMNGTN Reductase/0.504
4e2bFMNDehydrogenase/0.500
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.498
4e2dFMNDehydrogenase/0.495
4rnwFMNNADPH dehydrogenase 11.6.99.10.495
3gkaFMNN-ethylmaleimide reductase/0.494
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.493
4m5pFMNNADPH dehydrogenase/0.488
4df2FMNNADPH dehydrogenase/0.485
4tmcFMNOld yellow enzyme/0.484
3atzFMNProstaglandin F2a synthase/0.482
3p84FMNPentaerythritol tetranitrate reductase/0.482
1oycFMNNADPH dehydrogenase 11.6.99.10.467
3p8jFMNPentaerythritol tetranitrate reductase/0.466
3tjlFMNNADPH dehydrogenase/0.466
3atyFMNProstaglandin F2a synthase/0.464
1bwkFMNNADPH dehydrogenase 11.6.99.10.461
1h51FMNPentaerythritol tetranitrate reductase/0.460
3p8iFMNPentaerythritol tetranitrate reductase/0.460
4h6kFMNNADPH dehydrogenase 11.6.99.10.453
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.449
1oyaFMNNADPH dehydrogenase 11.6.99.10.447
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.445