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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2q3oFMN12-oxophytodienoate reductase 31.3.1.42

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2q3oFMN12-oxophytodienoate reductase 31.3.1.421.000
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.591
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.579
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.578
1icpFMN12-oxophytodienoate reductase 11.3.1.420.569
1q45FMN12-oxophytodienoate reductase 31.3.1.420.566
4tmbFMNOld yellow enzyme/0.508
2abbFMNPentaerythritol tetranitrate reductase/0.507
3p74FMNPentaerythritol tetranitrate reductase/0.502
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.501
1icqFMN12-oxophytodienoate reductase 11.3.1.420.497
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.488
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.487
4rnvFMNNADPH dehydrogenase 11.6.99.10.485
3f03FMNPentaerythritol tetranitrate reductase/0.473
1icsFMN12-oxophytodienoate reductase 11.3.1.420.471
1h50FMNPentaerythritol tetranitrate reductase/0.467
1h63FMNPentaerythritol tetranitrate reductase/0.466
4rnuFMNNADPH dehydrogenase 11.6.99.10.463
3p82FMNPentaerythritol tetranitrate reductase/0.457
3p84FMNPentaerythritol tetranitrate reductase/0.453
3p8iFMNPentaerythritol tetranitrate reductase/0.449