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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2px5SAHGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2px5SAHGenome polyprotein2.7.7.481.000
2px2SAHGenome polyprotein2.7.7.480.495
2pxaSAHGenome polyprotein2.7.7.480.476
4k6mSAHGenome polyprotein/0.459
3lkzSFGGenome polyprotein/0.457
4ctkSAMGenome polyprotein/0.454
3evcSAHGenome polyprotein2.1.1.560.450
2p41SAHGenome polyprotein/0.445
3eluSAMMethyltransferase/0.445