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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pvmP29Casein kinase II subunit alpha2.7.11.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2pvmP29Casein kinase II subunit alpha2.7.11.11.000
3be9P04Casein kinase II subunit alpha2.7.11.10.580
4anmWULCasein kinase II subunit alpha2.7.11.10.579
2pvlP55Casein kinase II subunit alpha2.7.11.10.578
2pvjP44Casein kinase II subunit alpha2.7.11.10.556
4grb0XGCasein kinase II subunit alpha2.7.11.10.543
4dgmAGICasein kinase II subunit alpha2.7.11.10.532
3q9xEMOCasein kinase II subunit alpha2.7.11.10.527
2pvnP63Casein kinase II subunit alpha2.7.11.10.518
4dgnLU2Casein kinase II subunit alpha2.7.11.10.518
2pvhP19Casein kinase II subunit alpha2.7.11.10.516
1dawANPCasein kinase II subunit alpha2.7.11.10.512
3ofm4B0Casein kinase II subunit alpha'2.7.11.10.506
1om1IQACasein kinase II subunit alpha2.7.11.10.492
3at4CCKCasein kinase II subunit alpha2.7.11.10.491
1m2pHNACasein kinase II subunit alpha2.7.11.10.487
3p23ADPSerine/threonine-protein kinase/endoribonuclease IRE12.7.11.10.472
5cvfATPCasein kinase II subunit alpha2.7.11.10.471
1dayGNPCasein kinase II subunit alpha2.7.11.10.470
3mb714ICasein kinase II subunit alpha2.7.11.10.467
3pe2E1BCasein kinase II subunit alpha2.7.11.10.466
4hge15VTyrosine-protein kinase JAK2/0.465
4fv6E57Mitogen-activated protein kinase 12.7.11.240.460
3axwTIDCasein kinase II subunit alpha2.7.11.10.456
2yaaATPDeath-associated protein kinase 2/0.452
3u4uLNHCasein kinase II subunit alpha2.7.11.10.451
3lpbNVBTyrosine-protein kinase JAK2/0.449
3nynSGVG protein-coupled receptor kinase 62.7.11.160.449
4aqc88ATyrosine-protein kinase JAK2/0.449
4pl4ADPSerine/threonine-protein kinase/endoribonuclease IRE12.7.11.10.446
2h8hH8HProto-oncogene tyrosine-protein kinase Src2.7.10.20.445
4k110J9Proto-oncogene tyrosine-protein kinase Src2.7.10.20.443
1qcfPP1Tyrosine-protein kinase HCK2.7.10.20.442