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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pvkP45Casein kinase II subunit alpha2.7.11.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
2pvkP45Casein kinase II subunit alpha2.7.11.11.000
1lp4ANPCasein kinase II subunit alpha2.7.11.10.624
2pvlP55Casein kinase II subunit alpha2.7.11.10.619
2pvjP44Casein kinase II subunit alpha2.7.11.10.584
2pvhP19Casein kinase II subunit alpha2.7.11.10.575
2pvmP29Casein kinase II subunit alpha2.7.11.10.563
1dawANPCasein kinase II subunit alpha2.7.11.10.546
4lfiGNPCasein kinase II subunit alpha2.7.11.10.529
1dayGNPCasein kinase II subunit alpha2.7.11.10.528
3be9P04Casein kinase II subunit alpha2.7.11.10.527
4dgo0JWCasein kinase II subunit alpha2.7.11.10.518
2pvnP63Casein kinase II subunit alpha2.7.11.10.508
5cvhADPCasein kinase II subunit alpha2.7.11.10.494
4mwhATPCasein kinase II subunit alpha2.7.11.10.491
2p33J07Mitogen-activated protein kinase 102.7.11.240.489
4jr7GNPCasein kinase II subunit alpha2.7.11.10.489
2bunFADAppA protein/0.488
4kxn6K62'-deoxynucleoside 5'-phosphate N-hydrolase 1/0.484
3eljGS7Mitogen-activated protein kinase 82.7.11.240.483
3at3ATKCasein kinase II subunit alpha2.7.11.10.482
1m2qMNXCasein kinase II subunit alpha2.7.11.10.481
3q43D66M1 family aminopeptidase3.4.110.481
4anmWULCasein kinase II subunit alpha2.7.11.10.481
2v5aLZLBiotin carboxylase6.3.4.140.479
4dgmAGICasein kinase II subunit alpha2.7.11.10.479
2fhnBNIAvidin-related protein 4/5/0.478
4v010LIFibroblast growth factor receptor 1 (Fms-related tyrosine kinase 2, Pfeiffer syndrome), isoform CRA_b/0.478
5ar4SB2Receptor-interacting serine/threonine-protein kinase 22.7.11.10.477
4aqc88ATyrosine-protein kinase JAK2/0.476
4dgnLU2Casein kinase II subunit alpha2.7.11.10.475
3crzFADFerredoxin--NADP+ reductase/0.474
1uy9PU6Heat shock protein HSP 90-alpha/0.473
1eyqNARChalcone--flavonone isomerase 15.5.1.60.472
1pmv537Mitogen-activated protein kinase 102.7.11.240.472
1m2rMNYCasein kinase II subunit alpha2.7.11.10.471
3cgfJNFMitogen-activated protein kinase 102.7.11.240.469
3pe2E1BCasein kinase II subunit alpha2.7.11.10.469
4bf2STUMitogen-activated protein kinase kinase kinase 52.7.11.250.469
4z63ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.469
5cvcPLPSerine racemase/0.469
4anv751Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.468
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.468
3lpbNVBTyrosine-protein kinase JAK2/0.467
3nga3NGCasein kinase II subunit alpha2.7.11.10.467
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.467
3a3bRBFLumazine protein/0.466
1uyhPU0Heat shock protein HSP 90-alpha/0.465
1nzdUPGDNA beta-glucosyltransferase/0.464
1nzfUPGDNA beta-glucosyltransferase/0.464
1y4lSVRBasic phospholipase A2 homolog 2/0.464
3t8vBTJM1 family aminopeptidase3.4.110.464
3i5zZ48Mitogen-activated protein kinase 12.7.11.240.463
3vt9YI4Vitamin D3 receptor/0.463
4fhj0TZPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.463
4e2bFMNDehydrogenase/0.461
4fhk0U0Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.461
4gub0Y4Casein kinase II subunit alpha2.7.11.10.461
4kz01UJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.461
2ejzSAHDiphthine synthase/0.460
3rvg17PTyrosine-protein kinase JAK2/0.460
4mv4ACPBiotin carboxylase6.3.4.140.460
2xs0ANPMitogen-activated protein kinase 82.7.11.240.459
1f4fTP3Thymidylate synthase/0.458
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.458
2h55DZ8Heat shock protein HSP 90-alpha/0.458
3owk18ECasein kinase II subunit alpha2.7.11.10.458
4bwxAGSPAB-dependent poly(A)-specific ribonuclease subunit pan3/0.458
1rfuADPPyridoxal kinase2.7.1.350.457
5cyoGDPSeptin-9/0.457
2np8CC3Aurora kinase A2.7.11.10.456
4fi1ATPCasein kinase II subunit alpha2.7.11.10.456
4hbgNDP3-oxoacyl-[acyl-carrier-protein] reductase1.1.1.1000.456
1kkq471Peroxisome proliferator-activated receptor alpha/0.455
2ifaFMNUncharacterized protein/0.455
2vr1ATFBiotin carboxylase6.3.4.140.455
2yee2ECHeat shock protein HSP 90-alpha/0.455
3r04UNQSerine/threonine-protein kinase pim-12.7.11.10.455
1vyrFMNPentaerythritol tetranitrate reductase/0.454
2cduADPNADH oxidase/0.454
4b4dFADFerredoxin-NADP reductase/0.454
4ge40KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.454
4ijp1EHSerine/threonine-protein kinase PRP4 homolog2.7.11.10.454
1q5kTMUGlycogen synthase kinase-3 beta2.7.11.260.453
2v7qATPATP synthase subunit alpha, mitochondrial/0.453
2v7qATPATP synthase subunit beta, mitochondrial3.6.3.140.453
3lqfNADGalactitol dehydrogenase/0.453
4h8nNDPNADPH-dependent conjugated polyketone reductase C2/0.453
4k5p1OSM1 family aminopeptidase3.4.110.453
4z61ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.453
2e9n76ASerine/threonine-protein kinase Chk12.7.11.10.452
2gnaGDUUDP-N-acetylglucosamine 4,6-dehydratase (inverting)4.2.1.1150.452
2r2nKYNKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.452
2v59LZKBiotin carboxylase6.3.4.140.452
3deyDHTEstradiol 17-beta-dehydrogenase 11.1.1.620.452
3klmDHTEstradiol 17-beta-dehydrogenase 11.1.1.620.452
3ofm4B0Casein kinase II subunit alpha'2.7.11.10.452
1a59COA2-methylcitrate synthase/0.451
1blzACVIsopenicillin N synthase1.21.3.10.451
3nr4PYVAbscisic acid receptor PYL2/0.451
3oibFDAPutative acyl-CoA dehydrogenase/0.451
3qx2X63Cyclin-dependent kinase 22.7.11.220.451
4bznUGXSerine/threonine-protein kinase pim-12.7.11.10.451
4gb90WRPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.451
4z64ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.451
2feuCAMCamphor 5-monooxygenase1.14.15.10.450
2i0y5CNMacrophage colony-stimulating factor 1 receptor2.7.10.10.450
2j8zNAPQuinone oxidoreductase PIG310.450
2w6zL21Biotin carboxylase6.3.4.140.450
3q9wEMOCasein kinase II subunit alpha2.7.11.10.450
3r7eX88Cyclin-dependent kinase 22.7.11.220.450
4g73NAIRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.450
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.450
1dhrNADDihydropteridine reductase1.5.1.340.449
1eh4IC1Casein kinase I homolog 12.7.11.10.449
1qrpHH0Pepsin A-43.4.23.10.449
2x9dITCTetracycline repressor protein class D/0.449
2xckMH43-phosphoinositide-dependent protein kinase 12.7.11.10.449
3a99ANPSerine/threonine-protein kinase pim-12.7.11.10.449
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.449
4a87NARMajor pollen allergen Bet v 1-A/0.449
5irnADPNucleotide binding oligomerization domain containing 2/0.449
1c0lFADD-amino-acid oxidase1.4.3.30.448
2b7aIZATyrosine-protein kinase JAK2/0.448
2fwyH64Heat shock protein HSP 90-alpha/0.448
2zbaZBATrichothecene 3-O-acetyltransferase/0.448
2ztvNADD(-)-3-hydroxybutyrate dehydrogenase/0.448
3mdmFJZCholesterol 24-hydroxylase/0.448
4gj30XPNon-receptor tyrosine-protein kinase TYK22.7.10.20.448
4ji91M3Tyrosine-protein kinase JAK2/0.448
5itzLOCTubulin beta-2B chain/0.448
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.447
1xelUPGUDP-glucose 4-epimerase5.1.3.20.447
1yrcCAMCamphor 5-monooxygenase1.14.15.10.447
2xb5I7TTetracycline repressor protein class D/0.447
3a1nNADNDP-sugar epimerase/0.447
4g3rCAMCamphor 5-monooxygenase1.14.15.10.447
1ia1NDPDihydrofolate reductase1.5.1.30.446
1t88CAMCamphor 5-monooxygenase1.14.15.10.446
1tduDURThymidylate synthase/0.446
1ydtIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.446
2clqSTUMitogen-activated protein kinase kinase kinase 52.7.11.250.446
2op18PCEnoyl-ACP reductase/0.446
2xiyXIYSerine/threonine-protein kinase pim-12.7.11.10.446
2ykiYKIHeat shock protein HSP 90-alpha/0.446
3zmmF9JTyrosine-protein kinase JAK2/0.446
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.446
4ix5ANPUncharacterized protein/0.446
4nu5NADPhosphonate dehydrogenase1.20.1.10.446
4oavACP2-5A-dependent ribonuclease3.1.260.446
5a9sNAPPutative dehydrogenase/0.446
5fwnNAPPutative dehydrogenase/0.446
1uyePU9Heat shock protein HSP 90-alpha/0.445
2yyyNAPGlyceraldehyde-3-phosphate dehydrogenase1.2.1.590.445
3atzFMNProstaglandin F2a synthase/0.445
3nxxNDPDihydrofolate reductase1.5.1.30.445
3u9eCOALmo1369 protein/0.445
3zonIK1Non-receptor tyrosine-protein kinase TYK22.7.10.20.445
4efuEFUHeat shock protein HSP 90-alpha/0.445
4gkm683Anthranilate phosphoribosyltransferase/0.445
4qzuRTLRetinol-binding protein 2/0.445
4r8qADPMitotic checkpoint serine/threonine-protein kinase BUB12.7.11.10.445
4rraA3TProbable threonine--tRNA ligase 26.1.1.30.445
1m75CAAHydroxyacyl-coenzyme A dehydrogenase, mitochondrial1.1.1.350.444
1ppjANYCytochrome b/0.444
2ay3MPPAromatic-amino-acid aminotransferase2.6.1.570.444
2qo9ANPEphrin type-A receptor 32.7.10.10.444
2ym1FADPhenylacetone monooxygenase1.14.13.920.444
4c02TAKActivin receptor type-12.7.11.300.444
4i8vBHFCytochrome P450 1A11.14.14.10.444
4z5wILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.444
5itzGTPTubulin alpha-1B chain/0.444
1pmn984Mitogen-activated protein kinase 102.7.11.240.443
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.443
1t87CAMCamphor 5-monooxygenase1.14.15.10.443
2an9GDPGuanylate kinase2.7.4.80.443
3b9lAZZSerum albumin/0.443
3gwfFADCyclohexanone monooxygenase/0.443
3sqzCOAPutative hydroxymethylglutaryl-CoA synthase/0.443
3uimANPBRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 12.7.10.10.443
4anuEM7Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
4btjADPTau-tubulin kinase 12.7.11.10.443
4eufNADTrans-2-enoyl-CoA reductase [NADH]/0.443
4ibmIR1Insulin receptor2.7.10.10.443
4wh2ADPN-acetylhexosamine 1-kinase2.7.1.1620.443
5drdATPAurora kinase A2.7.11.10.443
1nvsUCMSerine/threonine-protein kinase Chk12.7.11.10.442
1q8yADPSerine/threonine-protein kinase SKY12.7.11.10.442
1siqFADGlutaryl-CoA dehydrogenase, mitochondrial1.3.8.60.442
1udaUFGUDP-glucose 4-epimerase5.1.3.20.442
1upcTPPN(2)-(2-carboxyethyl)arginine synthase/0.442
1w6hTITPlasmepsin-23.4.23.390.442
2fwzH71Heat shock protein HSP 90-alpha/0.442
2gcgNDPGlyoxylate reductase/hydroxypyruvate reductase1.1.1.790.442
3flkNAITartrate dehydrogenase/decarboxylase1.1.1.930.442
3jzfJZKBiotin carboxylase6.3.4.140.442
3l1sZ92Glycogen synthase kinase-3 beta2.7.11.260.442
3mknDNBPyrimidine-specific ribonucleoside hydrolase RihB/0.442
3nj0PYVAbscisic acid receptor PYL2/0.442
4dijBLFE3 ubiquitin-protein ligase Mdm26.3.20.442
4g9kFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.442
4iqlFMNEnoyl-(Acyl-carrier-protein) reductase II/0.442
4l4eCAMCamphor 5-monooxygenase1.14.15.10.442
1db48INPhospholipase A2, membrane associated/0.441
1hdcCBO3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.441
1uy8PU5Heat shock protein HSP 90-alpha/0.441
1zp9ATPRIO-type serine/threonine-protein kinase Rio12.7.11.10.441
2f7x4EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.441
2zb45OPProstaglandin reductase 21.3.1.480.441
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.441
3qu0X40Cyclin-dependent kinase 22.7.11.220.441
3w8qAGSDual specificity mitogen-activated protein kinase kinase 12.7.12.20.441
4h8aNAIUreidoglycolate dehydrogenase (NAD(+))1.1.1.3500.441
4hvh19RTyrosine-protein kinase JAK32.7.10.20.441
4qemHC4Phospholipase A2 VRV-PL-VIIIa/0.441
1lf3EH5Plasmepsin-23.4.23.390.440
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.440
2ekaSAHDiphthine synthase/0.440
2pziAXXSerine/threonine-protein kinase PknG2.7.11.10.440
2rioADPSerine/threonine-protein kinase/endoribonuclease IRE12.7.11.10.440
2y6fM9FIsopenicillin N synthase1.21.3.10.440
3fz1B98Cyclin-dependent kinase 22.7.11.220.440
3q9zTXQCasein kinase II subunit alpha2.7.11.10.440
4bqpNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.440
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.440