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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2potGUNQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2potGUNQueuine tRNA-ribosyltransferase2.4.2.291.000
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.583
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.574
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.573
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.529
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.527
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.524
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.522
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.521
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.520
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.513
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.512
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.500
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.492
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.484
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.484
2pwuGUNQueuine tRNA-ribosyltransferase2.4.2.290.484
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.479
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.474
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.472
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.469
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.469
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.468
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.466
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.465
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.458
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.455
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.453
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.444
4ug71EVNitric oxide synthase oxygenase1.14.13.1650.443
4zqcF6FTryptophan synthase alpha chain/0.441