Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
2pk3 | A2R | GDP-6-deoxy-D-mannose reductase |
PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
---|---|---|---|---|---|
2pk3 | A2R | GDP-6-deoxy-D-mannose reductase | / | 1.000 | |
2pk3 | GDD | GDP-6-deoxy-D-mannose reductase | / | 0.600 | |
2z95 | NDP | GDP-mannose 4,6-dehydratase | / | 0.458 | |
3otw | COA | Phosphopantetheine adenylyltransferase | / | 0.456 | |
2j9f | THV | 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial | 1.2.4.4 | 0.453 | |
2j9f | THV | 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial | 1.2.4.4 | 0.453 | |
3te5 | NAI | 5'-AMP-activated protein kinase subunit gamma | / | 0.447 | |
4epl | JAI | Jasmonic acid-amido synthetase JAR1 | 6.3.2 | 0.444 | |
2zsa | ADP | Pantothenate kinase | 2.7.1.33 | 0.443 | |
2gjl | FMN | Nitronate monooxygenase | 1.13.12.16 | 0.440 | |
2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.440 |