sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2pk3	A2R	GDP-6-deoxy-D-mannose reductase

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
2pk3	A2R	GDP-6-deoxy-D-mannose reductase	/	1.000
2pk3	GDD	GDP-6-deoxy-D-mannose reductase	/	0.600
2z95	NDP	GDP-mannose 4,6-dehydratase	/	0.458
3otw	COA	Phosphopantetheine adenylyltransferase	/	0.456
2j9f	THV	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	1.2.4.4	0.453
2j9f	THV	2-oxoisovalerate dehydrogenase subunit beta, mitochondrial	1.2.4.4	0.453
3te5	NAI	5'-AMP-activated protein kinase subunit gamma	/	0.447
4epl	JAI	Jasmonic acid-amido synthetase JAR1	6.3.2	0.444
2zsa	ADP	Pantothenate kinase	2.7.1.33	0.443
2gjl	FMN	Nitronate monooxygenase	1.13.12.16	0.440
2oap	ANP	Type II secretion system protein (GspE-2)	/	0.440