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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pdaTPPPyruvate synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2pdaTPPPyruvate synthase/1.000
1kekHTLPyruvate synthase/0.575
2c42TPPPyruvate synthase/0.558
2c3oTPPPyruvate synthase/0.534
2uzaHTLPyruvate synthase/0.531
2c3p1TPPyruvate synthase/0.494
2c3yHTLPyruvate synthase/0.472
2c3u2TPPyruvate synthase/0.457