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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pd7FADVivid PAS protein VVD

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2pd7FADVivid PAS protein VVD/1.000
3hjiFADVivid PAS protein VVD/0.609
2pd8FADVivid PAS protein VVD/0.599
2pdtFADVivid PAS protein VVD/0.597
3hjkFADVivid PAS protein VVD/0.584
3d72FADVivid PAS protein VVD/0.579
3is2FADVivid PAS protein VVD/0.493
2z6dFMNPhototropin-22.7.11.10.461
1n9nFMNPutative blue light receptor/0.457
1pn3TYDdTDP-epi-vancosaminyltransferase2.4.1.3110.455
1n9lFMNPutative blue light receptor/0.454
5djuFMNNPH1-2/0.452
4eetFMNPhototropin-22.7.11.10.444
4ji91M3Tyrosine-protein kinase JAK2/0.444