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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2pcgSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2pcgSAHDiphthine synthase/1.000
2e7rSAHDiphthine synthase/0.839
2eleSAHDiphthine synthase/0.806
2el3SAHDiphthine synthase/0.782
2p6dSAHDiphthine synthase/0.752
2e8rSAHDiphthine synthase/0.748
2pb5SAHDiphthine synthase/0.724
2ehlSAHDiphthine synthase/0.717
2dxxSAHDiphthine synthase/0.706
2eldSAHDiphthine synthase/0.700
2owkSAHDiphthine synthase/0.698
2pckSAHDiphthine synthase/0.697
2eniSAHDiphthine synthase/0.694
2p5cSAHDiphthine synthase/0.693
2owgSAHDiphthine synthase/0.689
2ejkSAHDiphthine synthase/0.681
2pchSAHDiphthine synthase/0.677
2egbSAHDiphthine synthase/0.668
2dv3SAHDiphthine synthase/0.663
2emrSAHDiphthine synthase/0.663
2e8sSAHDiphthine synthase/0.661
2e4nSAHDiphthine synthase/0.656
2ekaSAHDiphthine synthase/0.655
2p2xSAHDiphthine synthase/0.655
2e08SAHDiphthine synthase/0.653
2p5fSAHDiphthine synthase/0.645
2ek4SAHDiphthine synthase/0.639
2p9dSAHDiphthine synthase/0.636
2eh5SAHDiphthine synthase/0.633
2dxvSAHDiphthine synthase/0.631
2dxwSAHDiphthine synthase/0.629
2p6iSAHDiphthine synthase/0.622
2pb6SAHDiphthine synthase/0.622
2emuSAHDiphthine synthase/0.620
2egsSAHDiphthine synthase/0.618
2dv7SAHDiphthine synthase/0.615
2eh2SAHDiphthine synthase/0.613
2dsiSAHDiphthine synthase/0.610
2huvSAHDiphthine synthase/0.606
2huxSAHDiphthine synthase/0.604
2p6kSAHDiphthine synthase/0.603
2pcmSAHDiphthine synthase/0.602
2e8qSAHDiphthine synthase/0.600
2pcaSAHDiphthine synthase/0.598
1vceSAHDiphthine synthase/0.597
2ek7SAHDiphthine synthase/0.592
2dv5SAHDiphthine synthase/0.583
2dsgSAHDiphthine synthase/0.582
2en5SAHDiphthine synthase/0.582
2eh4SAHDiphthine synthase/0.578
2e16SAHDiphthine synthase/0.577
2pb4SAHDiphthine synthase/0.576
2el0SAHDiphthine synthase/0.570
2hr8SAHDiphthine synthase/0.570
2pciSAHDiphthine synthase/0.569
1wngSAHDiphthine synthase/0.567
2ejjSAHDiphthine synthase/0.565
2dv4SAHDiphthine synthase/0.563
2ek2SAHDiphthine synthase/0.560
2hutSAHDiphthine synthase/0.560
2ek3SAHDiphthine synthase/0.559
2eglSAHDiphthine synthase/0.557
2dshSAHDiphthine synthase/0.552
2huqSAHDiphthine synthase/0.550
2ed5SAHDiphthine synthase/0.546
2z6rSAHDiphthine synthase/0.537
2e15SAHDiphthine synthase/0.535
2e07SAHDiphthine synthase/0.532
2owfSAHDiphthine synthase/0.532
2e8hSAHDiphthine synthase/0.525
2owvSAHDiphthine synthase/0.524
2owuSAHDiphthine synthase/0.522
2eeqSAHDiphthine synthase/0.518
2p6lSAHDiphthine synthase/0.517
2e17SAHDiphthine synthase/0.509
2dekSAHDiphthine synthase/0.506
2ejzSAHDiphthine synthase/0.486
2ed3SAHDiphthine synthase/0.479