Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2p9dSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2p9dSAHDiphthine synthase/1.000
2owgSAHDiphthine synthase/0.896
2pcaSAHDiphthine synthase/0.859
2huvSAHDiphthine synthase/0.844
2eh4SAHDiphthine synthase/0.840
2huqSAHDiphthine synthase/0.834
2dxxSAHDiphthine synthase/0.815
2pb5SAHDiphthine synthase/0.795
1wngSAHDiphthine synthase/0.783
2pckSAHDiphthine synthase/0.781
2dv5SAHDiphthine synthase/0.775
2dv3SAHDiphthine synthase/0.769
2e07SAHDiphthine synthase/0.767
2p5cSAHDiphthine synthase/0.767
2p6iSAHDiphthine synthase/0.761
2e7rSAHDiphthine synthase/0.753
2e4nSAHDiphthine synthase/0.740
2e8rSAHDiphthine synthase/0.734
2pcgSAHDiphthine synthase/0.733
2ek3SAHDiphthine synthase/0.728
2el0SAHDiphthine synthase/0.726
2p5fSAHDiphthine synthase/0.721
2ejjSAHDiphthine synthase/0.718
2pchSAHDiphthine synthase/0.716
2e15SAHDiphthine synthase/0.703
2z6rSAHDiphthine synthase/0.701
2eldSAHDiphthine synthase/0.698
2hutSAHDiphthine synthase/0.697
2el3SAHDiphthine synthase/0.690
2dv4SAHDiphthine synthase/0.681
2huxSAHDiphthine synthase/0.677
2ed5SAHDiphthine synthase/0.676
2e8qSAHDiphthine synthase/0.675
2eleSAHDiphthine synthase/0.675
2dv7SAHDiphthine synthase/0.672
2owkSAHDiphthine synthase/0.670
2dsiSAHDiphthine synthase/0.669
2dshSAHDiphthine synthase/0.665
2hr8SAHDiphthine synthase/0.665
2ejkSAHDiphthine synthase/0.663
2e08SAHDiphthine synthase/0.662
2ek4SAHDiphthine synthase/0.661
2eniSAHDiphthine synthase/0.661
2dxwSAHDiphthine synthase/0.659
2e17SAHDiphthine synthase/0.659
2ed3SAHDiphthine synthase/0.655
2eh2SAHDiphthine synthase/0.655
2p2xSAHDiphthine synthase/0.654
2dsgSAHDiphthine synthase/0.652
2ekaSAHDiphthine synthase/0.651
1vceSAHDiphthine synthase/0.645
2emrSAHDiphthine synthase/0.643
2p6kSAHDiphthine synthase/0.641
2pb6SAHDiphthine synthase/0.641
2egsSAHDiphthine synthase/0.638
2dxvSAHDiphthine synthase/0.637
2egbSAHDiphthine synthase/0.628
2ek2SAHDiphthine synthase/0.628
2eeqSAHDiphthine synthase/0.625
2e8sSAHDiphthine synthase/0.622
2pciSAHDiphthine synthase/0.619
2owuSAHDiphthine synthase/0.615
2en5SAHDiphthine synthase/0.613
2p6dSAHDiphthine synthase/0.613
2ehlSAHDiphthine synthase/0.610
2pb4SAHDiphthine synthase/0.606
2eh5SAHDiphthine synthase/0.599
2ek7SAHDiphthine synthase/0.595
2emuSAHDiphthine synthase/0.593
2pcmSAHDiphthine synthase/0.589
2owfSAHDiphthine synthase/0.586
2p6lSAHDiphthine synthase/0.578
2e8hSAHDiphthine synthase/0.568
2dekSAHDiphthine synthase/0.561
2eglSAHDiphthine synthase/0.559
2e16SAHDiphthine synthase/0.554
2ejzSAHDiphthine synthase/0.550
2owvSAHDiphthine synthase/0.543
4ougLP5Peptidoglycan recognition protein 1/0.455
5ao1DG3Deoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.454
4bfzZVZPantothenate kinase2.7.1.330.451
1f20FADNitric oxide synthase, brain1.14.13.390.445
1pjcNADAlanine dehydrogenase/0.445
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.442
3m1vCOMMethyl-coenzyme M reductase I subunit alpha2.8.4.10.440
3m1vCOMMethyl-coenzyme M reductase I subunit beta2.8.4.10.440