sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2p7z | OHT | Estrogen-related receptor gamma |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2p7z | OHT | Estrogen-related receptor gamma | / | 1.000 | |
| 1s9q | OHT | Estrogen-related receptor gamma | / | 0.637 | |
| 2ewp | TXF | Estrogen-related receptor gamma | / | 0.635 | |
| 2gpu | OHT | Estrogen-related receptor gamma | / | 0.599 | |
| 2gpv | OHT | Estrogen-related receptor gamma | / | 0.592 | |
| 2qe4 | JJ3 | Estrogen receptor | / | 0.557 | |
| 1sj0 | E4D | Estrogen receptor | / | 0.547 | |
| 1yin | CM3 | Estrogen receptor | / | 0.540 | |
| 1err | RAL | Estrogen receptor | / | 0.536 | |
| 1xqc | AEJ | Estrogen receptor | / | 0.528 | |
| 1s9p | DES | Estrogen-related receptor gamma | / | 0.526 | |
| 1xp6 | AIU | Estrogen receptor | / | 0.524 | |
| 1uom | PTI | Estrogen receptor | / | 0.518 | |
| 2jfa | RAL | Estrogen receptor | / | 0.516 | |
| 2fsz | OHT | Estrogen receptor beta | / | 0.506 | |
| 2jf9 | OHT | Estrogen receptor | / | 0.505 | |
| 2ovh | AS0 | Progesterone receptor | / | 0.504 | |
| 1nde | MON | Estrogen receptor beta | / | 0.496 | |
| 1qkn | RAL | Estrogen receptor beta | / | 0.494 | |
| 2pog | WST | Estrogen receptor | / | 0.490 | |
| 2bj4 | OHT | Estrogen receptor | / | 0.489 | |
| 1nhz | 486 | Glucocorticoid receptor | / | 0.482 | |
| 4qo9 | 627 | Serine/threonine-protein kinase 24 | 2.7.11.1 | 0.481 | |
| 4dfn | 0K1 | Tyrosine-protein kinase SYK | 2.7.10.2 | 0.480 | |
| 3wv9 | FEG | Hmd co-occurring protein HcgE | / | 0.477 | |
| 5ai5 | BSU | Bifunctional epoxide hydrolase 2 | 3.1.3.76 | 0.474 | |
| 3vt8 | YI3 | Vitamin D3 receptor | / | 0.473 | |
| 2itq | ITQ | Epidermal growth factor receptor | 2.7.10.1 | 0.471 | |
| 4a2j | AS0 | Progesterone receptor | / | 0.470 | |
| 2ovm | AS0 | Progesterone receptor | / | 0.466 | |
| 3w5p | 4OA | Vitamin D3 receptor | / | 0.465 | |
| 2fzh | DH1 | Dihydrofolate reductase | 1.5.1.3 | 0.464 | |
| 4oth | DRN | Serine/threonine-protein kinase N1 | / | 0.464 | |
| 2itp | AEE | Epidermal growth factor receptor | 2.7.10.1 | 0.462 | |
| 4bch | T7Z | Cyclin-dependent kinase 9 | 2.7.11.22 | 0.462 | |
| 1mzn | BM6 | Retinoic acid receptor RXR-alpha | / | 0.461 | |
| 1og5 | SWF | Cytochrome P450 2C9 | / | 0.461 | |
| 2z97 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.461 | |
| 3vtc | TK3 | Vitamin D3 receptor | / | 0.460 | |
| 3cse | N22 | Uncharacterized protein | / | 0.459 | |
| 3is9 | AC7 | Gag-Pol polyprotein | 2.7.7.49 | 0.459 | |
| 2xvv | 9DN | Serum albumin | / | 0.457 | |
| 4iar | ERM | 5-hydroxytryptamine receptor 1B | / | 0.456 | |
| 4ib4 | ERM | 5-hydroxytryptamine receptor 2B | / | 0.455 | |
| 2has | C3O | Vitamin D3 receptor | / | 0.454 | |
| 4nb6 | 444 | Nuclear receptor ROR-gamma | / | 0.454 | |
| 4nc3 | ERM | 5-hydroxytryptamine receptor 2B | / | 0.454 | |
| 2a1n | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.453 | |
| 4em9 | TCE | Peroxisome proliferator-activated receptor gamma | / | 0.453 | |
| 4y8w | STR | Steroid 21-hydroxylase | / | 0.453 | |
| 1klk | PMD | Dihydrofolate reductase | 1.5.1.3 | 0.452 | |
| 2w8y | 486 | Progesterone receptor | / | 0.452 | |
| 3pm0 | BHF | Cytochrome P450 1B1 | / | 0.452 | |
| 4i0t | 1B6 | Tyrosine-protein kinase SYK | 2.7.10.2 | 0.452 | |
| 1o76 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.451 | |
| 4acd | GR9 | Glycogen synthase kinase-3 beta | 2.7.11.26 | 0.451 | |
| 3l1s | Z92 | Glycogen synthase kinase-3 beta | 2.7.11.26 | 0.450 | |
| 4b7t | CWT | Glycogen synthase kinase-3 beta | 2.7.11.26 | 0.450 | |
| 1xdu | SFG | Aclacinomycin 10-hydroxylase RdmB | 4.1.1 | 0.449 | |
| 2imf | TOM | 2-hydroxychromene-2-carboxylate isomerase | 5.99.1.4 | 0.449 | |
| 1o5r | FR9 | Adenosine deaminase | 3.5.4.4 | 0.448 | |
| 4iaq | 2GM | 5-hydroxytryptamine receptor 1B | / | 0.448 | |
| 4mvf | STU | Calcium-dependent protein kinase 2 | 2.7.11.1 | 0.448 | |
| 1dz6 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.447 | |
| 1r00 | SAH | Aclacinomycin 10-hydroxylase RdmB | 4.1.1 | 0.447 | |
| 2j2i | LY4 | Serine/threonine-protein kinase pim-1 | 2.7.11.1 | 0.447 | |
| 2nru | T12 | Interleukin-1 receptor-associated kinase 4 | 2.7.11.1 | 0.447 | |
| 3w0h | W12 | Vitamin D3 receptor | / | 0.447 | |
| 1kzj | CB3 | Thymidylate synthase | / | 0.446 | |
| 2hb7 | O1C | Vitamin D3 receptor | / | 0.446 | |
| 2zlc | VDX | Vitamin D3 receptor | / | 0.446 | |
| 3anl | NDP | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | 1.1.1.267 | 0.446 | |
| 3hcr | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.446 | |
| 3vt9 | YI4 | Vitamin D3 receptor | / | 0.446 | |
| 3vtd | TKD | Vitamin D3 receptor | / | 0.446 | |
| 4acg | 6LQ | Glycogen synthase kinase-3 beta | 2.7.11.26 | 0.446 | |
| 1dz8 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.445 | |
| 1txi | TX5 | Vitamin D3 receptor | / | 0.445 | |
| 3mtf | A3F | Activin receptor type-1 | 2.7.11.30 | 0.445 | |
| 3qgt | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.445 | |
| 3uvv | REA | Retinoic acid receptor RXR-alpha | / | 0.445 | |
| 4g47 | TZF | Mycocyclosin synthase | 1.14.21.9 | 0.445 | |
| 4xym | COA | Acyl-CoA synthetase (NDP forming) | / | 0.445 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.444 | |
| 1e7q | NAP | GDP-L-fucose synthase | / | 0.444 | |
| 1qiw | DPD | Calmodulin | / | 0.444 | |
| 1vj3 | TAB | Dihydrofolate reductase | 1.5.1.3 | 0.444 | |
| 2i0e | PDS | Protein kinase C beta type | 2.7.11.13 | 0.444 | |
| 4ajw | VWN | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform | 2.7.1.153 | 0.444 | |
| 4l4a | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.444 | |
| 3fwj | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.443 | |
| 3gyu | DL7 | Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily | / | 0.443 | |
| 4dre | NAI | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.443 | |
| 4gb9 | 0WR | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.443 | |
| 4hle | 17V | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.443 | |
| 4iv4 | 1GS | Estrogen receptor | / | 0.443 | |
| 4l17 | DNQ | Glutamate receptor 2 | / | 0.443 | |
| 1mj3 | HXC | Enoyl-CoA hydratase, mitochondrial | 4.2.1.17 | 0.442 | |
| 1rdt | L79 | Retinoic acid receptor RXR-alpha | / | 0.442 | |
| 1stc | STU | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.442 | |
| 2azz | TCH | Phospholipase A2, major isoenzyme | 3.1.1.4 | 0.442 | |
| 2qjy | SMA | Cytochrome b | / | 0.442 | |
| 3vg9 | ZMA | Adenosine receptor A2a | / | 0.442 | |
| 3vtb | TKA | Vitamin D3 receptor | / | 0.442 | |
| 1fds | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.441 | |
| 1k74 | 9CR | Retinoic acid receptor RXR-alpha | / | 0.441 | |
| 1ly4 | COQ | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 1p44 | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.441 | |
| 2uxp | CLM | HTH-type transcriptional regulator TtgR | / | 0.441 | |
| 2yiu | SMA | Cytochrome b | / | 0.441 | |
| 3a25 | SAM | tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase | / | 0.441 | |
| 3w0i | O11 | Vitamin D3 receptor | / | 0.441 | |
| 4nky | 3QZ | Steroid 17-alpha-hydroxylase/17,20 lyase | / | 0.441 | |
| 1uyu | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.440 | |
| 2bfy | H1N | Aurora kinase B-A | 2.7.11.1 | 0.440 | |
| 2wuf | KEM | 4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase | 3.7.1.17 | 0.440 | |
| 3lak | KR1 | Gag-Pol polyprotein | 2.7.7.49 | 0.440 | |
| 3p9t | TCL | Repressor | / | 0.440 | |
| 3qly | 55V | Uncharacterized protein | / | 0.440 | |
| 3sd0 | TSK | Glycogen synthase kinase-3 beta | 2.7.11.26 | 0.440 | |
| 3w0j | T08 | Vitamin D3 receptor | / | 0.440 | |
| 4rw4 | 494 | Gag-Pol polyprotein | 2.7.7.49 | 0.440 | |
| 5akk | 1P8 | Bifunctional epoxide hydrolase 2 | 3.1.3.76 | 0.440 | |
| 5k2a | ZMA | Adenosine receptor A2a | / | 0.440 |