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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2p6iSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2p6iSAHDiphthine synthase/1.000
2p5cSAHDiphthine synthase/0.836
2dxxSAHDiphthine synthase/0.812
2pckSAHDiphthine synthase/0.809
2e08SAHDiphthine synthase/0.800
2pb5SAHDiphthine synthase/0.793
2dsiSAHDiphthine synthase/0.783
2e7rSAHDiphthine synthase/0.776
2owgSAHDiphthine synthase/0.772
2eeqSAHDiphthine synthase/0.752
2dv5SAHDiphthine synthase/0.749
2owuSAHDiphthine synthase/0.749
2eniSAHDiphthine synthase/0.747
2p9dSAHDiphthine synthase/0.728
2huvSAHDiphthine synthase/0.721
2ejkSAHDiphthine synthase/0.715
2p5fSAHDiphthine synthase/0.714
2e07SAHDiphthine synthase/0.713
2owkSAHDiphthine synthase/0.712
2dshSAHDiphthine synthase/0.707
2pcgSAHDiphthine synthase/0.707
2egbSAHDiphthine synthase/0.706
2eh4SAHDiphthine synthase/0.702
2e15SAHDiphthine synthase/0.701
2huqSAHDiphthine synthase/0.700
2ek3SAHDiphthine synthase/0.699
2e17SAHDiphthine synthase/0.694
2ed5SAHDiphthine synthase/0.692
2dv7SAHDiphthine synthase/0.688
2ejjSAHDiphthine synthase/0.675
2hutSAHDiphthine synthase/0.674
2p6kSAHDiphthine synthase/0.674
2ehlSAHDiphthine synthase/0.671
2e8hSAHDiphthine synthase/0.670
2dv3SAHDiphthine synthase/0.668
2e8rSAHDiphthine synthase/0.667
2p2xSAHDiphthine synthase/0.664
2dv4SAHDiphthine synthase/0.662
2dxwSAHDiphthine synthase/0.657
2z6rSAHDiphthine synthase/0.654
2el3SAHDiphthine synthase/0.653
2p6dSAHDiphthine synthase/0.648
2dxvSAHDiphthine synthase/0.647
2pcaSAHDiphthine synthase/0.647
2dsgSAHDiphthine synthase/0.646
2egsSAHDiphthine synthase/0.646
2eleSAHDiphthine synthase/0.642
2pchSAHDiphthine synthase/0.641
2e4nSAHDiphthine synthase/0.636
2pciSAHDiphthine synthase/0.635
2ekaSAHDiphthine synthase/0.631
2eh2SAHDiphthine synthase/0.629
2eldSAHDiphthine synthase/0.629
2owvSAHDiphthine synthase/0.629
1wngSAHDiphthine synthase/0.628
2emrSAHDiphthine synthase/0.626
1vceSAHDiphthine synthase/0.622
2ed3SAHDiphthine synthase/0.617
2el0SAHDiphthine synthase/0.617
2emuSAHDiphthine synthase/0.617
2e8sSAHDiphthine synthase/0.613
2ek2SAHDiphthine synthase/0.610
2dekSAHDiphthine synthase/0.609
2eh5SAHDiphthine synthase/0.599
2hr8SAHDiphthine synthase/0.593
2eglSAHDiphthine synthase/0.581
2owfSAHDiphthine synthase/0.579
2huxSAHDiphthine synthase/0.569
2pcmSAHDiphthine synthase/0.566
2ek4SAHDiphthine synthase/0.560
2e8qSAHDiphthine synthase/0.558
2p6lSAHDiphthine synthase/0.545
2pb6SAHDiphthine synthase/0.539
2e16SAHDiphthine synthase/0.530
2ek7SAHDiphthine synthase/0.528
2pb4SAHDiphthine synthase/0.525
2en5SAHDiphthine synthase/0.519
2ejzSAHDiphthine synthase/0.509
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.474
2qs3UBEGlutamate receptor ionotropic, kainate 1/0.460
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.450
2ojtUBAGlutamate receptor ionotropic, kainate 1/0.449
1vikBAYGag-Pol polyprotein/0.447
4hbgNDP3-oxoacyl-[acyl-carrier-protein] reductase1.1.1.1000.447
1re7FOLDihydrofolate reductase1.5.1.30.444
1dr3HBIDihydrofolate reductase1.5.1.30.442
2a94AP0L-lactate dehydrogenase1.1.1.270.442
1lbcCYZGlutamate receptor 2/0.440
2b8l5HABeta-secretase 13.4.23.460.440
2givACOHistone acetyltransferase KAT8/0.440