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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2p6dSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2p6dSAHDiphthine synthase/1.000
2eleSAHDiphthine synthase/0.824
2ehlSAHDiphthine synthase/0.823
2eniSAHDiphthine synthase/0.814
2owkSAHDiphthine synthase/0.779
2pcgSAHDiphthine synthase/0.755
2e8sSAHDiphthine synthase/0.753
2ejkSAHDiphthine synthase/0.753
2emrSAHDiphthine synthase/0.748
2e7rSAHDiphthine synthase/0.744
2ekaSAHDiphthine synthase/0.733
2e8rSAHDiphthine synthase/0.723
2dxwSAHDiphthine synthase/0.718
2dxvSAHDiphthine synthase/0.716
2p6kSAHDiphthine synthase/0.709
2eh5SAHDiphthine synthase/0.708
2p5fSAHDiphthine synthase/0.701
2emuSAHDiphthine synthase/0.699
2pcmSAHDiphthine synthase/0.693
2p5cSAHDiphthine synthase/0.684
2p2xSAHDiphthine synthase/0.680
2egsSAHDiphthine synthase/0.677
2e08SAHDiphthine synthase/0.672
2eh2SAHDiphthine synthase/0.670
2egbSAHDiphthine synthase/0.667
2el3SAHDiphthine synthase/0.665
2dv7SAHDiphthine synthase/0.655
2pb4SAHDiphthine synthase/0.654
2pb5SAHDiphthine synthase/0.648
2ek7SAHDiphthine synthase/0.644
2pckSAHDiphthine synthase/0.642
2dsiSAHDiphthine synthase/0.637
2ed5SAHDiphthine synthase/0.636
2dsgSAHDiphthine synthase/0.635
2dv4SAHDiphthine synthase/0.633
2eglSAHDiphthine synthase/0.628
2dxxSAHDiphthine synthase/0.626
2el0SAHDiphthine synthase/0.621
2e8qSAHDiphthine synthase/0.619
2e16SAHDiphthine synthase/0.610
2owgSAHDiphthine synthase/0.607
2p6iSAHDiphthine synthase/0.599
1vceSAHDiphthine synthase/0.593
2pb6SAHDiphthine synthase/0.592
2hutSAHDiphthine synthase/0.584
2eldSAHDiphthine synthase/0.583
2ek2SAHDiphthine synthase/0.582
2en5SAHDiphthine synthase/0.582
2huvSAHDiphthine synthase/0.579
1wngSAHDiphthine synthase/0.575
2e4nSAHDiphthine synthase/0.575
2pciSAHDiphthine synthase/0.574
2huxSAHDiphthine synthase/0.570
2owvSAHDiphthine synthase/0.569
2eeqSAHDiphthine synthase/0.564
2hr8SAHDiphthine synthase/0.564
2pchSAHDiphthine synthase/0.560
2owuSAHDiphthine synthase/0.554
2dv3SAHDiphthine synthase/0.553
2dv5SAHDiphthine synthase/0.550
2e15SAHDiphthine synthase/0.550
2e17SAHDiphthine synthase/0.548
2e8hSAHDiphthine synthase/0.547
2ejjSAHDiphthine synthase/0.542
2owfSAHDiphthine synthase/0.542
2dekSAHDiphthine synthase/0.537
2p9dSAHDiphthine synthase/0.537
2ek3SAHDiphthine synthase/0.530
2ek4SAHDiphthine synthase/0.528
2z6rSAHDiphthine synthase/0.521
2dshSAHDiphthine synthase/0.517
2ed3SAHDiphthine synthase/0.511
2p6lSAHDiphthine synthase/0.509
2pcaSAHDiphthine synthase/0.508
2eh4SAHDiphthine synthase/0.492
2huqSAHDiphthine synthase/0.487
2e07SAHDiphthine synthase/0.480
2ejzSAHDiphthine synthase/0.467