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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2p5fSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2p5fSAHDiphthine synthase/1.000
2p5cSAHDiphthine synthase/0.837
2p2xSAHDiphthine synthase/0.813
2owkSAHDiphthine synthase/0.807
2ejkSAHDiphthine synthase/0.773
2eniSAHDiphthine synthase/0.763
2pb5SAHDiphthine synthase/0.759
2owgSAHDiphthine synthase/0.758
2egsSAHDiphthine synthase/0.751
2dsiSAHDiphthine synthase/0.746
2ed5SAHDiphthine synthase/0.742
2p6kSAHDiphthine synthase/0.738
2e7rSAHDiphthine synthase/0.737
2dxxSAHDiphthine synthase/0.731
2eh2SAHDiphthine synthase/0.716
2ehlSAHDiphthine synthase/0.716
2owuSAHDiphthine synthase/0.714
2p6dSAHDiphthine synthase/0.710
2eleSAHDiphthine synthase/0.706
2egbSAHDiphthine synthase/0.703
2p6iSAHDiphthine synthase/0.696
2dv5SAHDiphthine synthase/0.691
2e8rSAHDiphthine synthase/0.687
2el0SAHDiphthine synthase/0.680
2hutSAHDiphthine synthase/0.680
2pckSAHDiphthine synthase/0.680
2pcgSAHDiphthine synthase/0.679
2dxwSAHDiphthine synthase/0.678
2huvSAHDiphthine synthase/0.676
2dv7SAHDiphthine synthase/0.667
2dxvSAHDiphthine synthase/0.664
2p9dSAHDiphthine synthase/0.659
2ekaSAHDiphthine synthase/0.651
2ek3SAHDiphthine synthase/0.648
2e08SAHDiphthine synthase/0.645
2emrSAHDiphthine synthase/0.641
2e8sSAHDiphthine synthase/0.638
2e17SAHDiphthine synthase/0.622
2ek2SAHDiphthine synthase/0.621
2pchSAHDiphthine synthase/0.621
2eeqSAHDiphthine synthase/0.620
2el3SAHDiphthine synthase/0.618
2eh5SAHDiphthine synthase/0.616
2e15SAHDiphthine synthase/0.613
2hr8SAHDiphthine synthase/0.613
2ejjSAHDiphthine synthase/0.609
2z6rSAHDiphthine synthase/0.607
2dshSAHDiphthine synthase/0.606
2pciSAHDiphthine synthase/0.601
1vceSAHDiphthine synthase/0.600
2eglSAHDiphthine synthase/0.600
2dv4SAHDiphthine synthase/0.599
2emuSAHDiphthine synthase/0.598
2eh4SAHDiphthine synthase/0.595
2pcaSAHDiphthine synthase/0.594
2huqSAHDiphthine synthase/0.589
1wngSAHDiphthine synthase/0.587
2e07SAHDiphthine synthase/0.582
2e8qSAHDiphthine synthase/0.582
2ed3SAHDiphthine synthase/0.582
2e4nSAHDiphthine synthase/0.574
2pcmSAHDiphthine synthase/0.574
2dv3SAHDiphthine synthase/0.573
2dsgSAHDiphthine synthase/0.571
2ek7SAHDiphthine synthase/0.571
2eldSAHDiphthine synthase/0.562
2pb4SAHDiphthine synthase/0.562
2pb6SAHDiphthine synthase/0.562
2en5SAHDiphthine synthase/0.554
2owvSAHDiphthine synthase/0.554
2owfSAHDiphthine synthase/0.553
2e8hSAHDiphthine synthase/0.545
2e16SAHDiphthine synthase/0.540
2dekSAHDiphthine synthase/0.538
2ek4SAHDiphthine synthase/0.527
2huxSAHDiphthine synthase/0.520
2ejzSAHDiphthine synthase/0.484
2p6lSAHDiphthine synthase/0.466
2y1tDUDSPBc2 prophage-derived deoxyuridine 5'-triphosphate nucleotidohydrolase YosS3.6.1.230.457
2gjlFMNNitronate monooxygenase1.13.12.160.444
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.443
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.441