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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2p5cSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2p5cSAHDiphthine synthase/1.000
2pb5SAHDiphthine synthase/0.847
2dsiSAHDiphthine synthase/0.825
2p6kSAHDiphthine synthase/0.776
2e7rSAHDiphthine synthase/0.759
2p5fSAHDiphthine synthase/0.734
2p2xSAHDiphthine synthase/0.725
2eniSAHDiphthine synthase/0.701
2dxxSAHDiphthine synthase/0.696
2p6iSAHDiphthine synthase/0.696
2owgSAHDiphthine synthase/0.695
2eeqSAHDiphthine synthase/0.693
2ejkSAHDiphthine synthase/0.668
2dv5SAHDiphthine synthase/0.661
2owkSAHDiphthine synthase/0.656
2pckSAHDiphthine synthase/0.656
2e8sSAHDiphthine synthase/0.651
2ed5SAHDiphthine synthase/0.650
2egsSAHDiphthine synthase/0.632
2pcgSAHDiphthine synthase/0.629
2dshSAHDiphthine synthase/0.623
2ehlSAHDiphthine synthase/0.622
2dv7SAHDiphthine synthase/0.619
2p6dSAHDiphthine synthase/0.609
2dxwSAHDiphthine synthase/0.608
2p9dSAHDiphthine synthase/0.607
2huvSAHDiphthine synthase/0.605
2dxvSAHDiphthine synthase/0.596
2e8rSAHDiphthine synthase/0.592
2eleSAHDiphthine synthase/0.588
2owuSAHDiphthine synthase/0.588
2ekaSAHDiphthine synthase/0.586
2hutSAHDiphthine synthase/0.581
2dv4SAHDiphthine synthase/0.580
2el0SAHDiphthine synthase/0.580
2eh2SAHDiphthine synthase/0.574
2e08SAHDiphthine synthase/0.571
2pchSAHDiphthine synthase/0.569
2e15SAHDiphthine synthase/0.568
2egbSAHDiphthine synthase/0.568
2ek3SAHDiphthine synthase/0.568
2emrSAHDiphthine synthase/0.568
2eh4SAHDiphthine synthase/0.567
2e17SAHDiphthine synthase/0.556
2eh5SAHDiphthine synthase/0.556
2el3SAHDiphthine synthase/0.554
2huqSAHDiphthine synthase/0.554
2e07SAHDiphthine synthase/0.552
2dsgSAHDiphthine synthase/0.542
2dv3SAHDiphthine synthase/0.541
2ejjSAHDiphthine synthase/0.538
1wngSAHDiphthine synthase/0.536
2pcaSAHDiphthine synthase/0.536
2z6rSAHDiphthine synthase/0.536
2e4nSAHDiphthine synthase/0.533
2emuSAHDiphthine synthase/0.525
2ek2SAHDiphthine synthase/0.524
1vceSAHDiphthine synthase/0.520
2eldSAHDiphthine synthase/0.516
2pciSAHDiphthine synthase/0.514
2ed3SAHDiphthine synthase/0.509
2pcmSAHDiphthine synthase/0.508
2eglSAHDiphthine synthase/0.504
2e8qSAHDiphthine synthase/0.503
2ek7SAHDiphthine synthase/0.493
2e8hSAHDiphthine synthase/0.489
2huxSAHDiphthine synthase/0.488
2owfSAHDiphthine synthase/0.485
2owvSAHDiphthine synthase/0.473
2pb6SAHDiphthine synthase/0.473
2ek4SAHDiphthine synthase/0.470
2en5SAHDiphthine synthase/0.468
2ejzSAHDiphthine synthase/0.467
2e16SAHDiphthine synthase/0.456