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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2p2xSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2p2xSAHDiphthine synthase/1.000
2p5cSAHDiphthine synthase/0.710
2p5fSAHDiphthine synthase/0.708
2p6kSAHDiphthine synthase/0.683
2dsiSAHDiphthine synthase/0.665
2owkSAHDiphthine synthase/0.661
2pb5SAHDiphthine synthase/0.652
2e7rSAHDiphthine synthase/0.649
2ejkSAHDiphthine synthase/0.646
2owuSAHDiphthine synthase/0.646
2eniSAHDiphthine synthase/0.614
2egsSAHDiphthine synthase/0.610
2owgSAHDiphthine synthase/0.609
2e8sSAHDiphthine synthase/0.604
2p6dSAHDiphthine synthase/0.601
2ed5SAHDiphthine synthase/0.598
2ehlSAHDiphthine synthase/0.590
2egbSAHDiphthine synthase/0.589
2eeqSAHDiphthine synthase/0.586
2pcgSAHDiphthine synthase/0.583
2e08SAHDiphthine synthase/0.580
2dxwSAHDiphthine synthase/0.579
2eleSAHDiphthine synthase/0.579
2dxxSAHDiphthine synthase/0.578
2e8rSAHDiphthine synthase/0.570
2ejjSAHDiphthine synthase/0.570
2dxvSAHDiphthine synthase/0.568
2ekaSAHDiphthine synthase/0.556
2eh2SAHDiphthine synthase/0.551
2el0SAHDiphthine synthase/0.547
2dv5SAHDiphthine synthase/0.545
2el3SAHDiphthine synthase/0.545
2p6iSAHDiphthine synthase/0.545
2dshSAHDiphthine synthase/0.538
2huvSAHDiphthine synthase/0.538
2emrSAHDiphthine synthase/0.534
2e07SAHDiphthine synthase/0.533
2pckSAHDiphthine synthase/0.533
2eglSAHDiphthine synthase/0.527
2pchSAHDiphthine synthase/0.511
2e4nSAHDiphthine synthase/0.504
2ek7SAHDiphthine synthase/0.504
2hr8SAHDiphthine synthase/0.504
2p9dSAHDiphthine synthase/0.504
2e17SAHDiphthine synthase/0.503
2ed3SAHDiphthine synthase/0.503
2z6rSAHDiphthine synthase/0.503
2pcmSAHDiphthine synthase/0.502
2eh5SAHDiphthine synthase/0.500
2dv4SAHDiphthine synthase/0.499
2emuSAHDiphthine synthase/0.497
2owvSAHDiphthine synthase/0.497
1vceSAHDiphthine synthase/0.494
2e15SAHDiphthine synthase/0.492
2huqSAHDiphthine synthase/0.488
2pb4SAHDiphthine synthase/0.487
2en5SAHDiphthine synthase/0.486
2pciSAHDiphthine synthase/0.484
2dv7SAHDiphthine synthase/0.483
2e16SAHDiphthine synthase/0.481
2ek2SAHDiphthine synthase/0.480
2owfSAHDiphthine synthase/0.478
1wngSAHDiphthine synthase/0.474
2e8qSAHDiphthine synthase/0.471
2hutSAHDiphthine synthase/0.470
2pb6SAHDiphthine synthase/0.465
2eh4SAHDiphthine synthase/0.463
2dekSAHDiphthine synthase/0.460
2dsgSAHDiphthine synthase/0.457
2dv3SAHDiphthine synthase/0.454
2e8hSAHDiphthine synthase/0.448
2huxSAHDiphthine synthase/0.446