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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ok8FADFerredoxin--NADP reductase, apicoplast

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2ok8FADFerredoxin--NADP reductase, apicoplast/1.000
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.575
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.543
1gawFADFerredoxin/0.539
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.536
1h85FADFerredoxin--NADP reductase1.18.1.20.528
3zc3FADFerredoxin--NADP reductase1.18.1.20.528
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.528
1w35FADFerredoxin--NADP reductase1.18.1.20.527
1bjkFADFerredoxin--NADP reductase1.18.1.20.525
2rc6FADFerredoxin--NADP reductase/0.525
3vo2FADFerredoxin--NADP reductase/0.523
1fdrFADFerredoxin--NADP reductase1.18.1.20.519
1e64FADFerredoxin--NADP reductase1.18.1.20.518
1gjrFADFerredoxin--NADP reductase1.18.1.20.510
3w5uFADFerredoxin/0.510
1sm4FADFerredoxin--NADP reductase/0.509
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.507
3fpkFADFerredoxin-NADP reductase/0.506
1go2FADFerredoxin--NADP reductase1.18.1.20.501
1w87FADFerredoxin--NADP reductase1.18.1.20.501
1qh0FADFerredoxin--NADP reductase1.18.1.20.500
3zbtFADFerredoxin--NADP reductase1.18.1.20.500
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.20.499
1qgyFADFerredoxin--NADP reductase1.18.1.20.497
4c43FADFerredoxin--NADP reductase1.18.1.20.490
1ja1FADNADPH--cytochrome P450 reductase/0.483
2b5oFADFerredoxin--NADP reductase1.18.1.20.483
1gaqFADFerredoxin/0.481
1h42FADFerredoxin--NADP reductase1.18.1.20.481
4yaoFADNADPH--cytochrome P450 reductase/0.475
1ewyFADFerredoxin--NADP reductase1.18.1.20.473
3jqrFADFerredoxin--NADP reductase, apicoplast/0.469
1b2rFADFerredoxin--NADP reductase1.18.1.20.467
4bfxZVXPantothenate kinase2.7.1.330.467
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.466
1amoFADNADPH--cytochrome P450 reductase/0.464
1krhFADBenzoate 1,2-dioxygenase electron transfer component1.18.1.30.463
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.462
4bprFADFerredoxin--NADP reductase1.18.1.20.462
1queFADFerredoxin--NADP reductase1.18.1.20.458
1tllFADNitric oxide synthase, brain1.14.13.390.457
2vnjFADNADPH:ferredoxin reductase/0.457
1vbmYSATyrosine--tRNA ligase6.1.1.10.453
5a0yCOMMethyl-coenzyme M reductase I subunit alpha2.8.4.10.452
5a0yCOMMethyl-coenzyme M reductase I subunit beta2.8.4.10.452
1i7pFADNADH-cytochrome b5 reductase 31.6.2.20.448
1ogjFADFerredoxin--NADP reductase1.18.1.20.447
2zs8ADPPantothenate kinase2.7.1.330.447
1ndhFADNADH-cytochrome b5 reductase 31.6.2.20.446
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.446
2e0nSAHPrecorrin-2 C20-methyltransferase/0.445
5ah5LSSLeucine--tRNA ligase/0.445
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.444
1ib0FADNADH-cytochrome b5 reductase 31.6.2.20.441
2aouCQAHistamine N-methyltransferase2.1.1.80.441
2j2pSC2Ficolin-2/0.441
2oliIOPBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.441
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.441
3hl0NADMaleylacetate reductase/0.441
3ojxFADNADPH--cytochrome P450 reductase/0.441
4bftZVTPantothenate kinase2.7.1.330.441
4qemHC4Phospholipase A2 VRV-PL-VIIIa/0.441
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.440
4eagATP5'-AMP-activated protein kinase subunit gamma-1/0.440