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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2npxFADNADH peroxidase1.11.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2npxFADNADH peroxidase1.11.1.11.000
1nhsFADNADH peroxidase1.11.1.10.672
1nhrFADNADH peroxidase1.11.1.10.648
1nhpFADNADH peroxidase1.11.1.10.635
1nhqFADNADH peroxidase1.11.1.10.581
1f8wFADNADH peroxidase1.11.1.10.517
1joaFADNADH peroxidase1.11.1.10.505