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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2nmtNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.97

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2nmtNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.971.000
4a32MYAGlycylpeptide N-tetradecanoyltransferase/0.589
4a30MYAGlycylpeptide N-tetradecanoyltransferase/0.582
5ag7MYAGlycylpeptide N-tetradecanoyltransferase/0.579
4c2xNHWGlycylpeptide N-tetradecanoyltransferase 2/0.564
4cgpMYAGlycylpeptide N-tetradecanoyltransferase/0.553
4b13NHWGlycylpeptide N-tetradecanoyltransferase/0.545
5a27MYAGlycylpeptide N-tetradecanoyltransferase/0.545
4a2zMYAGlycylpeptide N-tetradecanoyltransferase/0.539
4b12NHWGlycylpeptide N-tetradecanoyltransferase/0.537
4b10NHWGlycylpeptide N-tetradecanoyltransferase/0.534
4b14NHWGlycylpeptide N-tetradecanoyltransferase/0.531
2yneNHWGlycylpeptide N-tetradecanoyltransferase/0.522
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.509
5ag6MYAGlycylpeptide N-tetradecanoyltransferase/0.508
4a95NHWGlycylpeptide N-tetradecanoyltransferase/0.470
5ag5MYAGlycylpeptide N-tetradecanoyltransferase/0.449