sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2ldb | NAD | L-lactate dehydrogenase | 1.1.1.27 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2ldb | NAD | L-lactate dehydrogenase | 1.1.1.27 | 1.000 | |
| 4rls | NAI | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.599 | |
| 4l4s | NAI | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.540 | |
| 3d4p | NAD | L-lactate dehydrogenase 1 | 1.1.1.27 | 0.525 | |
| 4i9n | 1E5 | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.524 | |
| 4i1i | NAD | Malate dehydrogenase | / | 0.521 | |
| 2aa3 | AP0 | L-lactate dehydrogenase | / | 0.514 | |
| 4mdh | NAD | Malate dehydrogenase, cytoplasmic | 1.1.1.37 | 0.509 | |
| 1wze | NAD | Malate dehydrogenase | / | 0.505 | |
| 1hyg | NAP | L-2-hydroxycarboxylate dehydrogenase (NAD(P)(+)) | / | 0.501 | |
| 1ez4 | NAD | L-lactate dehydrogenase | 1.1.1.27 | 0.491 | |
| 2a92 | NAI | L-lactate dehydrogenase | / | 0.484 | |
| 4i8x | 6P3 | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.484 | |
| 4i9h | 1E4 | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.480 | |
| 1b8v | NAD | Malate dehydrogenase | / | 0.479 | |
| 3te5 | NAI | 5'-AMP-activated protein kinase subunit gamma | / | 0.474 | |
| 3wsw | NAD | L-lactate dehydrogenase | / | 0.474 | |
| 1bmd | NAD | Malate dehydrogenase | / | 0.471 | |
| 1b8u | NAD | Malate dehydrogenase | / | 0.467 | |
| 1bdm | NAX | Malate dehydrogenase | / | 0.463 | |
| 1guy | NAD | Malate dehydrogenase | / | 0.463 | |
| 1uxk | NAD | Malate dehydrogenase | / | 0.460 | |
| 3gvh | NAD | Malate dehydrogenase | / | 0.457 | |
| 4uun | NAI | L-lactate dehydrogenase | / | 0.456 | |
| 1i7g | AZ2 | Peroxisome proliferator-activated receptor alpha | / | 0.454 | |
| 2cvq | NDP | Malate dehydrogenase | / | 0.454 | |
| 3w6h | AZM | Carbonic anhydrase 1 | 4.2.1.1 | 0.450 | |
| 1rne | C60 | Renin | 3.4.23.15 | 0.449 | |
| 1xe5 | 5FE | Plasmepsin-2 | 3.4.23.39 | 0.449 | |
| 2gjl | FMN | Nitronate monooxygenase | 1.13.12.16 | 0.448 | |
| 3uyl | TYD | Probable NDP-rhamnosyltransferase | / | 0.447 | |
| 4eyw | L0R | Carnitine O-palmitoyltransferase 2, mitochondrial | 2.3.1.21 | 0.446 | |
| 1wzi | NDP | Malate dehydrogenase | / | 0.445 | |
| 4hp8 | NAP | 2-deoxy-D-gluconate 3-dehydrogenase | / | 0.445 | |
| 2g1s | 4IG | Renin | 3.4.23.15 | 0.442 | |
| 2iko | 7IG | Renin | 3.4.23.15 | 0.442 | |
| 3otw | COA | Phosphopantetheine adenylyltransferase | / | 0.442 | |
| 1lbc | CYZ | Glutamate receptor 2 | / | 0.441 | |
| 1ur5 | NAD | Malate dehydrogenase | / | 0.441 | |
| 2cf6 | NAP | Cinnamyl alcohol dehydrogenase 5 | 1.1.1.195 | 0.441 | |
| 1vi2 | NAD | Quinate/shikimate dehydrogenase | / | 0.440 | |
| 3d91 | REM | Renin | 3.4.23.15 | 0.440 |