Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jj8AZZDeoxynucleoside kinase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2jj8AZZDeoxynucleoside kinase/1.000
4jlm1NNDeoxycytidine kinase2.7.1.740.471
3qen5BTDeoxycytidine kinase2.7.1.740.470
4jlk1NODeoxycytidine kinase2.7.1.740.454
3mjrAC2Deoxycytidine kinase2.7.1.740.452
2zi63D1Deoxycytidine kinase2.7.1.740.448