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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2jdvL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.11

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2jdvL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.111.000
3l9mL9McAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.528
2f7e2EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.508
2oh02PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.505
2uvyGVIcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.487
2uztSS3cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.487
1q8uH52cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.482
1stcSTUcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.469
2f7z6EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.468
2uw0GVKcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.461
2uzwSS4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.461
2jdsL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.450
2vo3M04cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.445
3dndLL2cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.444
2uw4L15cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.443
2vo0M03cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.442
1xh8R55cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.440