sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2ih5	NEA	Modification methylase TaqI	2.1.1.72

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
2ih5	NEA	Modification methylase TaqI	2.1.1.72	1.000
2np6	NEA	Modification methylase TaqI	2.1.1.72	0.533
1g38	NEA	Modification methylase TaqI	2.1.1.72	0.527
2adm	SAM	Modification methylase TaqI	2.1.1.72	0.489
2hwr	DRD	Peroxisome proliferator-activated receptor gamma	/	0.465
4g95	OAG	Dihydrofolate reductase	1.5.1.3	0.457
2j3j	HC4	NADPH-dependent oxidoreductase 2-alkenal reductase	1.3.1.74	0.453
1pqc	444	Oxysterols receptor LXR-beta	/	0.451
2he5	NDP	Aldo-keto reductase family 1 member C21	1.1.1	0.447
1bws	NDP	GDP-L-fucose synthase	/	0.445
2ih2	NEA	Modification methylase TaqI	2.1.1.72	0.445
2y8l	ADP	5'-AMP-activated protein kinase subunit gamma-1	/	0.443
3iae	D7K	Benzaldehyde lyase	/	0.443
4ejm	NAP	Putative zinc-binding dehydrogenase	/	0.443
1hf3	NAD	Alcohol dehydrogenase E chain	1.1.1.1	0.441
2q5g	1FA	Peroxisome proliferator-activated receptor delta	/	0.441
3r83	Z14	Cyclin-dependent kinase 2	2.7.11.22	0.441
3vdq	NAD	3-hydroxybutyrate dehydrogenase	/	0.441
4rvn	COA	Phenylacetate-coenzyme A ligase	/	0.440