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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2i6a5I5Adenosine kinase2.7.1.20

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2i6a5I5Adenosine kinase2.7.1.201.000
3fhxPLPPyridoxal kinase2.7.1.350.481
2a9y26AAdenosine kinase2.7.1.200.462
2a9z26AAdenosine kinase2.7.1.200.456
1h65GDPTranslocase of chloroplast 343.6.50.442
5efwFMNNPH1-1/0.442
3tk0FADFAD-linked sulfhydryl oxidase ALR1.8.3.20.441
1u28NAPNAD(P) transhydrogenase subunit beta1.6.1.20.440