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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hvdADPNucleoside diphosphate kinase A2.7.4.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2hvdADPNucleoside diphosphate kinase A2.7.4.61.000
1nueGDPNucleoside diphosphate kinase B2.7.4.60.494
3nguADPNucleoside diphosphate kinase/0.491
1be4PCGNucleoside diphosphate kinase A 22.7.4.60.478
1zs6ADPNucleoside diphosphate kinase 32.7.4.60.463
2hveADPNucleoside diphosphate kinase A2.7.4.60.443