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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2huqSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2huqSAHDiphthine synthase/1.000
2e07SAHDiphthine synthase/0.833
2eh4SAHDiphthine synthase/0.830
2p9dSAHDiphthine synthase/0.826
2huvSAHDiphthine synthase/0.803
2owgSAHDiphthine synthase/0.785
2pcaSAHDiphthine synthase/0.777
2ejjSAHDiphthine synthase/0.772
2e4nSAHDiphthine synthase/0.769
1wngSAHDiphthine synthase/0.764
2dshSAHDiphthine synthase/0.761
2ek3SAHDiphthine synthase/0.735
2z6rSAHDiphthine synthase/0.732
2p6iSAHDiphthine synthase/0.731
2dxxSAHDiphthine synthase/0.730
2dv5SAHDiphthine synthase/0.727
2e15SAHDiphthine synthase/0.715
2pb5SAHDiphthine synthase/0.710
2dv3SAHDiphthine synthase/0.708
2el3SAHDiphthine synthase/0.704
2e8rSAHDiphthine synthase/0.703
2ed3SAHDiphthine synthase/0.698
2owuSAHDiphthine synthase/0.693
2e17SAHDiphthine synthase/0.686
2hutSAHDiphthine synthase/0.686
2el0SAHDiphthine synthase/0.682
2eldSAHDiphthine synthase/0.682
2e08SAHDiphthine synthase/0.681
2p5cSAHDiphthine synthase/0.681
2pckSAHDiphthine synthase/0.676
2hr8SAHDiphthine synthase/0.675
2ek4SAHDiphthine synthase/0.670
2dv4SAHDiphthine synthase/0.658
2ek2SAHDiphthine synthase/0.657
2ed5SAHDiphthine synthase/0.653
1vceSAHDiphthine synthase/0.650
2eeqSAHDiphthine synthase/0.648
2e7rSAHDiphthine synthase/0.645
2egbSAHDiphthine synthase/0.643
2owkSAHDiphthine synthase/0.642
2pb6SAHDiphthine synthase/0.642
2dekSAHDiphthine synthase/0.631
2pchSAHDiphthine synthase/0.626
2p5fSAHDiphthine synthase/0.625
2p2xSAHDiphthine synthase/0.620
2dsiSAHDiphthine synthase/0.619
2pcgSAHDiphthine synthase/0.618
2e8qSAHDiphthine synthase/0.617
2pciSAHDiphthine synthase/0.617
2huxSAHDiphthine synthase/0.613
2eh2SAHDiphthine synthase/0.610
2eleSAHDiphthine synthase/0.610
2owvSAHDiphthine synthase/0.608
2p6lSAHDiphthine synthase/0.607
2eniSAHDiphthine synthase/0.603
2egsSAHDiphthine synthase/0.597
2dv7SAHDiphthine synthase/0.596
2dsgSAHDiphthine synthase/0.593
2dxwSAHDiphthine synthase/0.591
2eglSAHDiphthine synthase/0.589
2ehlSAHDiphthine synthase/0.580
2emrSAHDiphthine synthase/0.578
2e8hSAHDiphthine synthase/0.576
2owfSAHDiphthine synthase/0.576
2ejkSAHDiphthine synthase/0.567
2dxvSAHDiphthine synthase/0.564
2e16SAHDiphthine synthase/0.563
2en5SAHDiphthine synthase/0.559
2ekaSAHDiphthine synthase/0.555
2ek7SAHDiphthine synthase/0.553
2e8sSAHDiphthine synthase/0.541
2emuSAHDiphthine synthase/0.541
2p6dSAHDiphthine synthase/0.538
2p6kSAHDiphthine synthase/0.537
2eh5SAHDiphthine synthase/0.534
2pb4SAHDiphthine synthase/0.533
2pcmSAHDiphthine synthase/0.518
2ejzSAHDiphthine synthase/0.506
2gjlFMNNitronate monooxygenase1.13.12.160.451
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.447
1xe55FEPlasmepsin-23.4.23.390.446
3lqfNADGalactitol dehydrogenase/0.445
4iqlFMNEnoyl-(Acyl-carrier-protein) reductase II/0.445
4g3jVNTLanosterol 14-alpha-demethylase/0.444
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.444
4ougLP5Peptidoglycan recognition protein 1/0.442
3ziuLSSLeucyl-tRNA synthetase/0.441
1f20FADNitric oxide synthase, brain1.14.13.390.440
1pjcNADAlanine dehydrogenase/0.440
1xddAAYIntegrin alpha-L/0.440
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.440
4m4922YL-lactate dehydrogenase A chain1.1.1.270.440