Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2hsa | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2hsa | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 1.000 | |
| 3hgo | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.547 | |
| 3hgs | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.524 | |
| 1h63 | FMN | Pentaerythritol tetranitrate reductase | / | 0.523 | |
| 4df2 | FMN | NADPH dehydrogenase | / | 0.514 | |
| 1vji | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.513 | |
| 2hs8 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.512 | |
| 1icq | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.508 | |
| 3p62 | FMN | Pentaerythritol tetranitrate reductase | / | 0.507 | |
| 4m5p | FMN | NADPH dehydrogenase | / | 0.507 | |
| 1q45 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.506 | |
| 3dy8 | 5GP | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.506 | |
| 4qai | FMN | NADPH dehydrogenase | / | 0.503 | |
| 1lm1 | FMN | Ferredoxin-dependent glutamate synthase 2 | 1.4.7.1 | 0.502 | |
| 2viy | VG3 | Beta-secretase 1 | 3.4.23.46 | 0.501 | |
| 3tjl | FMN | NADPH dehydrogenase | / | 0.496 | |
| 1drh | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.494 | |
| 3hgr | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.494 | |
| 3dyl | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.493 | |
| 1h51 | FMN | Pentaerythritol tetranitrate reductase | / | 0.492 | |
| 3f03 | FMN | Pentaerythritol tetranitrate reductase | / | 0.492 | |
| 1h50 | FMN | Pentaerythritol tetranitrate reductase | / | 0.490 | |
| 2a9y | 26A | Adenosine kinase | 2.7.1.20 | 0.489 | |
| 2dv5 | SAH | Diphthine synthase | / | 0.489 | |
| 1bwl | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.488 | |
| 1uda | UFG | UDP-glucose 4-epimerase | 5.1.3.2 | 0.488 | |
| 2e8h | SAH | Diphthine synthase | / | 0.488 | |
| 4dpt | AGS | Mevalonate diphosphate decarboxylase | / | 0.488 | |
| 4ycp | FMN | tRNA-dihydrouridine(16) synthase | / | 0.488 | |
| 1kvk | ATP | Mevalonate kinase | 2.7.1.36 | 0.487 | |
| 1ahh | NAD | 7-alpha-hydroxysteroid dehydrogenase | 1.1.1.159 | 0.486 | |
| 4g2l | 0WL | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.486 | |
| 4m11 | MXM | Prostaglandin G/H synthase 2 | 1.14.99.1 | 0.486 | |
| 2q3o | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.484 | |
| 6req | 3CP | Methylmalonyl-CoA mutase large subunit | 5.4.99.2 | 0.484 | |
| 2oke | DUP | DUTP pyrophosphatase | / | 0.483 | |
| 3dyl | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.483 | |
| 1lf3 | EH5 | Plasmepsin-2 | 3.4.23.39 | 0.482 | |
| 2eh4 | SAH | Diphthine synthase | / | 0.482 | |
| 2ek3 | SAH | Diphthine synthase | / | 0.482 | |
| 1dor | FMN | Dihydroorotate dehydrogenase A (fumarate) | 1.3.98.1 | 0.480 | |
| 2p6l | SAH | Diphthine synthase | / | 0.480 | |
| 3nta | COA | FAD-dependent pyridine nucleotide-disulphide oxidoreductase | / | 0.480 | |
| 4fd2 | ADP | Chaperone protein ClpB | / | 0.480 | |
| 4mr9 | 2BX | Gamma-aminobutyric acid type B receptor subunit 1 | / | 0.480 | |
| 3p67 | FMN | Pentaerythritol tetranitrate reductase | / | 0.479 | |
| 4die | C5P | Cytidylate kinase | / | 0.479 | |
| 3pld | F90 | Endothiapepsin | 3.4.23.22 | 0.478 | |
| 4prx | ADP | DNA gyrase subunit B | / | 0.478 | |
| 4uoc | NCN | CinA-like protein | / | 0.478 | |
| 4k9h | 1QU | Beta-secretase 1 | 3.4.23.46 | 0.477 | |
| 4y35 | F90 | Endothiapepsin | 3.4.23.22 | 0.477 | |
| 2e16 | SAH | Diphthine synthase | / | 0.476 | |
| 2y3p | SM8 | DNA gyrase subunit A | / | 0.476 | |
| 4g2j | 0WF | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.476 | |
| 4jic | FMN | GTN Reductase | / | 0.476 | |
| 2e4n | SAH | Diphthine synthase | / | 0.475 | |
| 2owg | SAH | Diphthine synthase | / | 0.475 | |
| 4e2b | FMN | Dehydrogenase | / | 0.475 | |
| 4g95 | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.475 | |
| 1oya | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.474 | |
| 2cgx | 3D3 | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.474 | |
| 2egl | SAH | Diphthine synthase | / | 0.474 | |
| 3bm1 | FMN | Putative NAD(P)H nitroreductase YdjA | / | 0.474 | |
| 3oqf | S51 | Renin | 3.4.23.15 | 0.474 | |
| 3pdn | SFG | Histone-lysine N-methyltransferase SMYD3 | 2.1.1.43 | 0.474 | |
| 2yy7 | NAD | L-threonine dehydrogenase | / | 0.473 | |
| 3ing | NDP | Homoserine dehydrogenase related protein | / | 0.473 | |
| 4bf9 | FMN | tRNA-dihydrouridine(16) synthase | / | 0.473 | |
| 4fui | UI3 | Urokinase-type plasminogen activator | 3.4.21.73 | 0.473 | |
| 1k02 | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.472 | |
| 1kbo | 340 | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.472 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.472 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.472 | |
| 2pk3 | A2R | GDP-6-deoxy-D-mannose reductase | / | 0.472 | |
| 2qs3 | UBE | Glutamate receptor ionotropic, kainate 1 | / | 0.472 | |
| 3b9l | AZZ | Serum albumin | / | 0.472 | |
| 3mpi | FAD | Glutaryl-CoA dehydrogenase | 1.3.99.32 | 0.472 | |
| 4fn4 | NAD | Short chain dehydrogenase | / | 0.472 | |
| 1dir | NAD | Dihydropteridine reductase | 1.5.1.34 | 0.471 | |
| 1ofe | FMN | Ferredoxin-dependent glutamate synthase 2 | 1.4.7.1 | 0.471 | |
| 2abb | FMN | Pentaerythritol tetranitrate reductase | / | 0.471 | |
| 2clm | F6F | Tryptophan synthase alpha chain | / | 0.471 | |
| 3dyq | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.471 | |
| 3p0h | FSE | Putative tyrosyl-tRNA synthetase | / | 0.471 | |
| 4yr9 | NAD | L-threonine 3-dehydrogenase, mitochondrial | 1.1.1.103 | 0.471 | |
| 1ay0 | TPP | Transketolase 1 | 2.2.1.1 | 0.470 | |
| 2hux | SAH | Diphthine synthase | / | 0.470 | |
| 2q7v | FAD | Thioredoxin reductase | / | 0.470 | |
| 3lpk | Z76 | Beta-secretase 1 | 3.4.23.46 | 0.470 | |
| 3r2b | 05B | MAP kinase-activated protein kinase 2 | 2.7.11.1 | 0.470 | |
| 3zc5 | W9Z | Hepatocyte growth factor receptor | 2.7.10.1 | 0.470 | |
| 4jhz | 1KV | Beta-glucuronidase | 3.2.1.31 | 0.470 | |
| 4nbt | NAD | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 0.470 | |
| 1dli | UDX | UDP-glucose 6-dehydrogenase | / | 0.469 | |
| 2huv | SAH | Diphthine synthase | / | 0.469 | |
| 3b2s | B2S | Trichothecene 3-O-acetyltransferase | / | 0.469 | |
| 3k3e | PDB | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.469 | |
| 3lpj | Z75 | Beta-secretase 1 | 3.4.23.46 | 0.469 | |
| 3r83 | Z14 | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.469 | |
| 2hut | SAH | Diphthine synthase | / | 0.468 | |
| 2owu | SAH | Diphthine synthase | / | 0.468 | |
| 2p83 | MR0 | Beta-secretase 1 | 3.4.23.46 | 0.468 | |
| 2q1s | NAI | Putative nucleotide sugar epimerase/ dehydratase | / | 0.468 | |
| 3dy8 | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.468 | |
| 4e2d | FMN | Dehydrogenase | / | 0.468 | |
| 4ejm | NAP | Putative zinc-binding dehydrogenase | / | 0.468 | |
| 1llw | FMN | Ferredoxin-dependent glutamate synthase 2 | 1.4.7.1 | 0.467 | |
| 1nvs | UCM | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.467 | |
| 1ofd | FMN | Ferredoxin-dependent glutamate synthase 2 | 1.4.7.1 | 0.467 | |
| 1xs7 | MMI | Beta-secretase 1 | 3.4.23.46 | 0.467 | |
| 1zrz | BI1 | Protein kinase C iota type | 2.7.11.13 | 0.467 | |
| 2br5 | SAH | Cephalosporin hydroxylase CmcI | / | 0.467 | |
| 2q3r | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.467 | |
| 3aty | FMN | Prostaglandin F2a synthase | / | 0.467 | |
| 3p82 | FMN | Pentaerythritol tetranitrate reductase | / | 0.467 | |
| 4e90 | 7RG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.467 | |
| 4fgc | PQ0 | NADPH-dependent 7-cyano-7-deazaguanine reductase | 1.7.1.13 | 0.467 | |
| 4m83 | ERY | Oleandomycin glycosyltransferase | 2.4.1 | 0.467 | |
| 1fdi | MGD | Formate dehydrogenase H | 1.1.99.33 | 0.466 | |
| 1ikg | REX | D-alanyl-D-alanine carboxypeptidase | 3.4.16.4 | 0.466 | |
| 1yun | ATP | Probable nicotinate-nucleotide adenylyltransferase | 2.7.7.18 | 0.466 | |
| 2e8r | SAH | Diphthine synthase | / | 0.466 | |
| 2g24 | 7IG | Renin | 3.4.23.15 | 0.466 | |
| 2p6i | SAH | Diphthine synthase | / | 0.466 | |
| 2voj | NAD | Alanine dehydrogenase | 1.4.1.1 | 0.466 | |
| 3bv2 | P38 | Mitogen-activated protein kinase 14 | / | 0.466 | |
| 3fsj | D7K | Benzoylformate decarboxylase | 4.1.1.7 | 0.466 | |
| 4awt | FMN | NADH:flavin oxidoreductase Sye1 | / | 0.466 | |
| 4fj0 | NAP | 17beta-hydroxysteroid dehydrogenase | / | 0.466 | |
| 4jtq | NAP | Aldo-keto reductase family 1 member C2 | / | 0.466 | |
| 4kby | C2E | Stimulator of interferon genes protein | / | 0.466 | |
| 4tmc | FMN | Old yellow enzyme | / | 0.466 | |
| 1e8z | STU | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.465 | |
| 1fdo | MGD | Formate dehydrogenase H | 1.1.99.33 | 0.465 | |
| 2ejj | SAH | Diphthine synthase | / | 0.465 | |
| 2ztm | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.465 | |
| 3ih0 | ANP | Uncharacterized sugar kinase PH1459 | 2.7.1 | 0.465 | |
| 3ixj | 586 | Beta-secretase 1 | 3.4.23.46 | 0.465 | |
| 4mv8 | ACP | Biotin carboxylase | 6.3.4.14 | 0.465 | |
| 4x3m | ADN | RNA 2'-O ribose methyltransferase | / | 0.465 | |
| 2a94 | AP0 | L-lactate dehydrogenase | 1.1.1.27 | 0.464 | |
| 2ab8 | MTP | Adenosine kinase | 2.7.1.20 | 0.464 | |
| 2e15 | SAH | Diphthine synthase | / | 0.464 | |
| 2eh2 | SAH | Diphthine synthase | / | 0.464 | |
| 2ggs | NDP | dTDP-4-dehydrorhamnose reductase | / | 0.464 | |
| 2ntr | L00 | Beta-secretase 1 | 3.4.23.46 | 0.464 | |
| 2owv | SAH | Diphthine synthase | / | 0.464 | |
| 2pb4 | SAH | Diphthine synthase | / | 0.464 | |
| 2pzj | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.464 | |
| 3ai3 | NDP | NADPH-sorbose reductase | / | 0.464 | |
| 3g4g | D71 | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.464 | |
| 3ime | BZ2 | Pantothenate synthetase | 6.3.2.1 | 0.464 | |
| 4ocp | ADP | N-acetylhexosamine 1-kinase | 2.7.1.162 | 0.464 | |
| 1f0y | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.463 | |
| 1wng | SAH | Diphthine synthase | / | 0.463 | |
| 2hr8 | SAH | Diphthine synthase | / | 0.463 | |
| 2hu2 | NAD | C-terminal binding protein 1 | / | 0.463 | |
| 2ii6 | C5P | Alpha-2,3/2,6-sialyltransferase/sialidase | / | 0.463 | |
| 2p8h | MY9 | Beta-secretase 1 | 3.4.23.46 | 0.463 | |
| 4jnk | ZHK | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.463 | |
| 2c29 | NAP | Dihydroflavonol 4-reductase | / | 0.462 | |
| 2dek | SAH | Diphthine synthase | / | 0.462 | |
| 2dv3 | SAH | Diphthine synthase | / | 0.462 | |
| 2iku | LIY | Renin | 3.4.23.15 | 0.462 | |
| 2pca | SAH | Diphthine synthase | / | 0.462 | |
| 2pch | SAH | Diphthine synthase | / | 0.462 | |
| 3jyo | NAD | Quinate/shikimate dehydrogenase (NAD(+)) | / | 0.462 | |
| 3qvp | FAD | Glucose oxidase | 1.1.3.4 | 0.462 | |
| 3rqq | BA3 | ADP-dependent (S)-NAD(P)H-hydrate dehydratase | / | 0.462 | |
| 5fm6 | ADP | RuvB-like helicase | / | 0.462 | |
| 1oyc | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.461 | |
| 1vcf | FMN | Isopentenyl-diphosphate delta-isomerase | / | 0.461 | |
| 1vyr | FMN | Pentaerythritol tetranitrate reductase | / | 0.461 | |
| 2eud | GCQ | Ribonucleoside-diphosphate reductase large chain 1 | 1.17.4.1 | 0.461 | |
| 2v00 | V15 | Endothiapepsin | 3.4.23.22 | 0.461 | |
| 3g2h | KOT | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.461 | |
| 4eji | 0QA | Cytochrome P450 2A13 | 1.14.14.1 | 0.461 | |
| 4rrv | ATP | 3-phosphoinositide-dependent protein kinase 1 | 2.7.11.1 | 0.461 | |
| 1iki | REY | D-alanyl-D-alanine carboxypeptidase | 3.4.16.4 | 0.460 | |
| 1lf2 | R37 | Plasmepsin-2 | 3.4.23.39 | 0.460 | |
| 1rx8 | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.460 | |
| 2c20 | NAD | UDP-glucose 4-epimerase | / | 0.460 | |
| 2c3k | ABO | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.460 | |
| 2dxx | SAH | Diphthine synthase | / | 0.460 | |
| 2ek2 | SAH | Diphthine synthase | / | 0.460 | |
| 2fre | FMN | NAD(P)H-flavin oxidoreductase | / | 0.460 | |
| 2owk | SAH | Diphthine synthase | / | 0.460 | |
| 2x9d | ITC | Tetracycline repressor protein class D | / | 0.460 | |
| 3dys | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.460 | |
| 3kc3 | MK2 | MAP kinase-activated protein kinase 2 | 2.7.11.1 | 0.460 | |
| 4dpy | 2P0 | Mevalonate diphosphate decarboxylase | / | 0.460 | |
| 4gid | 0GH | Beta-secretase 1 | 3.4.23.46 | 0.460 | |
| 4loy | 6XS | Prothrombin | 3.4.21.5 | 0.460 | |
| 4m6j | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.460 | |
| 4s26 | SAH | Phosphomethylpyrimidine synthase, chloroplastic | 4.1.99.17 | 0.460 | |
| 4wuc | ANP | DNA gyrase subunit B | / | 0.460 | |
| 1dmy | AZM | Carbonic anhydrase 5A, mitochondrial | 4.2.1.1 | 0.459 | |
| 2djx | FMN | Dihydroorotate dehydrogenase (fumarate) | 1.3.98.1 | 0.459 | |
| 2dxv | SAH | Diphthine synthase | / | 0.459 | |
| 2egb | SAH | Diphthine synthase | / | 0.459 | |
| 2el3 | SAH | Diphthine synthase | / | 0.459 | |
| 2gjl | FMN | Nitronate monooxygenase | 1.13.12.16 | 0.459 | |
| 2iyf | ERY | Oleandomycin glycosyltransferase | 2.4.1 | 0.459 | |
| 2y4g | TIR | TamL | / | 0.459 | |
| 3eku | CY9 | Actin-5C | / | 0.459 | |
| 3jv7 | NAD | Secondary alcohol dehydrogenase | / | 0.459 | |
| 3kjm | 245 | Cytokinin dehydrogenase 1 | 1.5.99.12 | 0.459 | |
| 3nyc | FAD | FAD-dependent catabolic D-arginine dehydrogenase DauA | / | 0.459 | |
| 3tne | RIT | Candidapepsin-1 | 3.4.23.24 | 0.459 | |
| 4e7r | 0NW | Prothrombin | 3.4.21.5 | 0.459 | |
| 4lb2 | DM5 | Serum albumin | / | 0.459 | |
| 5c6c | CMP | cGMP-dependent protein kinase 2 | 2.7.11.12 | 0.459 | |
| 1ezv | UQ6 | Cytochrome b | / | 0.458 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.458 | |
| 2egs | SAH | Diphthine synthase | / | 0.458 | |
| 2v2z | ADP | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | / | 0.458 | |
| 2z6c | FMN | Phototropin-1 | 2.7.11.1 | 0.458 | |
| 3v3m | 0EN | Replicase polyprotein 1a | 3.4.19.12 | 0.458 | |
| 4gj3 | 0XP | Non-receptor tyrosine-protein kinase TYK2 | 2.7.10.2 | 0.458 | |
| 1d0l | BLG | Membrane-bound lytic murein transglycosylase B | 4.2.2.n1 | 0.457 | |
| 1gc5 | ADP | ADP-dependent glucokinase | 2.7.1.147 | 0.457 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.457 | |
| 1llz | FMN | Ferredoxin-dependent glutamate synthase 2 | 1.4.7.1 | 0.457 | |
| 1tqf | 32P | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
| 1y7l | ASN_LEU_ASN_ILE | Cysteine synthase | 2.5.1.47 | 0.457 | |
| 2bkj | FMN | NADPH-flavin oxidoreductase | / | 0.457 | |
| 2dsh | SAH | Diphthine synthase | / | 0.457 | |
| 2ekp | NAD | 2-deoxy-D-gluconate 3-dehydrogenase | / | 0.457 | |
| 2pb6 | SAH | Diphthine synthase | / | 0.457 | |
| 2qbm | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.457 | |
| 2qdx | FAD | Ferredoxin--NADP+ reductase | / | 0.457 | |
| 2qzl | IXS | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
| 2r6g | ATP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.457 | |
| 2vke | TAC | Tetracycline repressor protein class D | / | 0.457 | |
| 3h3j | NAD | L-lactate dehydrogenase 1 | 1.1.1.27 | 0.457 | |
| 3lpi | Z74 | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
| 4xfj | ANP | Argininosuccinate synthase | / | 0.457 | |
| 1bwk | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.456 | |
| 1u33 | LM2 | Pancreatic alpha-amylase | / | 0.456 | |
| 2c31 | TZD | Oxalyl-CoA decarboxylase | 4.1.1.8 | 0.456 | |
| 2cgv | 3B3 | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.456 | |
| 2eld | SAH | Diphthine synthase | / | 0.456 | |
| 2gfd | RDA | Endoplasmin | / | 0.456 | |
| 3jsw | JAR | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.456 | |
| 3vqh | IQB | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.456 | |
| 4ft7 | H3K | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.456 | |
| 4fxy | 0W2 | Neurolysin, mitochondrial | 3.4.24.16 | 0.456 | |
| 4rnv | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.456 | |
| 4z61 | ILE_THR_GLN_TYS_TYS | Phytosulfokine receptor 1 | 2.7.11.1 | 0.456 | |
| 5a3c | NAD | SIR2 family protein | / | 0.456 | |
| 1itz | TPP | Transketolase, chloroplastic | 2.2.1.1 | 0.455 | |
| 1jue | FMN | Dihydroorotate dehydrogenase A (fumarate) | 1.3.98.1 | 0.455 | |
| 1wxj | IPL | Tryptophan synthase alpha chain | / | 0.455 | |
| 2a1h | GBN | Branched-chain-amino-acid aminotransferase, mitochondrial | 2.6.1.42 | 0.455 | |
| 2ed5 | SAH | Diphthine synthase | / | 0.455 | |
| 2eka | SAH | Diphthine synthase | / | 0.455 | |
| 2emu | SAH | Diphthine synthase | / | 0.455 | |
| 2iqg | F2I | Beta-secretase 1 | 3.4.23.46 | 0.455 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.455 | |
| 2p5c | SAH | Diphthine synthase | / | 0.455 | |
| 2web | PP4 | Penicillopepsin-1 | 3.4.23.20 | 0.455 | |
| 3dv3 | MEK | Dual specificity mitogen-activated protein kinase kinase 1 | 2.7.12.2 | 0.455 | |
| 3fp0 | FP0 | 15-O-acetyltransferase | / | 0.455 | |
| 3pbz | F02 | Endothiapepsin | 3.4.23.22 | 0.455 | |
| 3ppo | DCK | Glycine betaine/carnitine/choline-binding protein OpuCC | / | 0.455 | |
| 4e2w | JHZ | Methyltransferase | / | 0.455 | |
| 4ftr | 5HK | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.455 | |
| 4mr7 | 2BV | Gamma-aminobutyric acid type B receptor subunit 1 | / | 0.455 | |
| 4opg | FDA | Conserved Archaeal protein | / | 0.455 | |
| 1h22 | E10 | Acetylcholinesterase | 3.1.1.7 | 0.454 | |
| 1ju9 | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.454 | |
| 1pl6 | 572 | Sorbitol dehydrogenase | 1.1.1.14 | 0.454 | |
| 2dv4 | SAH | Diphthine synthase | / | 0.454 | |
| 2p5f | SAH | Diphthine synthase | / | 0.454 | |
| 2z6r | SAH | Diphthine synthase | / | 0.454 | |
| 3bkb | STU | Tyrosine-protein kinase Fes/Fps | 2.7.10.2 | 0.454 | |
| 3dva | TPW | Pyruvate dehydrogenase E1 component subunit alpha | 1.2.4.1 | 0.454 | |
| 3dva | TPW | Pyruvate dehydrogenase E1 component subunit beta | 1.2.4.1 | 0.454 | |
| 3fhx | PLP | Pyridoxal kinase | 2.7.1.35 | 0.454 | |
| 3lq4 | TDP | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.454 | |
| 3pmy | 41L | Endothiapepsin | 3.4.23.22 | 0.454 | |
| 3zhy | FM6 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | / | 0.454 | |
| 4g8j | THM | Uridine phosphorylase | / | 0.454 | |
| 4iac | ACP | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.454 | |
| 4ig8 | DTP | 2'-5'-oligoadenylate synthase 1 | / | 0.454 | |
| 4jc5 | 1K5 | Stimulator of interferon genes protein | / | 0.454 | |
| 4z63 | ILE_THR_GLN_TYS_TYS | Phytosulfokine receptor 1 | 2.7.11.1 | 0.454 | |
| 5b1y | NDP | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 0.454 | |
| 1a8r | GTP | GTP cyclohydrolase 1 | 3.5.4.16 | 0.453 | |
| 1cbf | SAH | Cobalt-precorrin-4 C(11)-methyltransferase | 2.1.1.271 | 0.453 | |
| 1gco | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.453 | |
| 1m75 | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.453 | |
| 1n7h | NDP | GDP-mannose 4,6 dehydratase 2 | 4.2.1.47 | 0.453 | |
| 1p0p | BCH | Cholinesterase | 3.1.1.8 | 0.453 | |
| 2dsg | SAH | Diphthine synthase | / | 0.453 | |
| 2emr | SAH | Diphthine synthase | / | 0.453 | |
| 2i4q | UA4 | Renin | 3.4.23.15 | 0.453 | |
| 2il2 | LIX | Renin | 3.4.23.15 | 0.453 | |
| 2v13 | C40 | Renin | 3.4.23.15 | 0.453 | |
| 3rdq | DTB | Streptavidin | / | 0.453 | |
| 3tox | NAP | Putative oxidoreductase | / | 0.453 | |
| 3upk | UD1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | / | 0.453 | |
| 3w2e | NAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.453 | |
| 4dpi | 0N1 | Beta-secretase 1 | 3.4.23.46 | 0.453 | |
| 4qzu | RTL | Retinol-binding protein 2 | / | 0.453 | |
| 4y38 | 0A9 | Endothiapepsin | 3.4.23.22 | 0.453 | |
| 1kh3 | ANP | Argininosuccinate synthase | / | 0.452 | |
| 1psa | 0ZL | Pepsin A | 3.4.23.1 | 0.452 | |
| 1vce | SAH | Diphthine synthase | / | 0.452 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.452 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.452 | |
| 2gmh | FAD | Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial | 1.5.5.1 | 0.452 | |
| 2yy2 | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.452 | |
| 2zsh | GA3 | Gibberellin receptor GID1A | 3 | 0.452 | |
| 3k3h | BYE | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.452 | |
| 3k5d | XLI | Beta-secretase 1 | 3.4.23.46 | 0.452 | |
| 3p8j | FMN | Pentaerythritol tetranitrate reductase | / | 0.452 | |
| 3qiy | QI1 | Botulinum neurotoxin type A | 3.4.24.69 | 0.452 | |
| 4hhd | FMN | Phototropin-1 | 2.7.11.1 | 0.452 | |
| 4m87 | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.452 | |
| 4yd7 | F5N | Endothiapepsin | 3.4.23.22 | 0.452 | |
| 1ia1 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.451 | |
| 1ib0 | FAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.451 | |
| 1uay | ADN | Oxidoreductase | / | 0.451 | |
| 2b53 | D23 | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.451 | |
| 2bgm | NAJ | Secoisolariciresinol dehydrogenase | 1.1.1.331 | 0.451 | |
| 2bri | ANP | Uridylate kinase | 2.7.4.22 | 0.451 | |
| 2dv7 | SAH | Diphthine synthase | / | 0.451 | |
| 2en5 | SAH | Diphthine synthase | / | 0.451 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.451 | |
| 3dyq | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.451 | |
| 3keq | NAD | Redox-sensing transcriptional repressor Rex | / | 0.451 | |
| 3wb2 | YGP | Uncharacterized protein MJ0488 | / | 0.451 | |
| 4b45 | GSP | Tubulin-like protein CetZ2 | / | 0.451 | |
| 4fnc | HMU | G/T mismatch-specific thymine DNA glycosylase | 3.2.2.29 | 0.451 | |
| 4ke1 | 1R6 | Beta-secretase 1 | 3.4.23.46 | 0.451 | |
| 4mok | FAD | Pyranose 2-oxidase | / | 0.451 | |
| 4prv | ADP | DNA gyrase subunit B | / | 0.451 | |
| 4y3j | HIC | Endothiapepsin | 3.4.23.22 | 0.451 | |
| 5c8w | PCG | cGMP-dependent protein kinase 2 | 2.7.11.12 | 0.451 | |
| 1cs4 | FOK | Adenylate cyclase type 2 | / | 0.450 | |
| 1cs4 | FOK | Adenylate cyclase type 5 | / | 0.450 | |
| 1f20 | FAD | Nitric oxide synthase, brain | 1.14.13.39 | 0.450 | |
| 1m78 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.450 | |
| 1omo | NAD | Alanine dehydrogenase | / | 0.450 | |
| 1pdh | FAS | p-hydroxybenzoate hydroxylase | / | 0.450 | |
| 1u2y | GOX | Pancreatic alpha-amylase | / | 0.450 | |
| 1zgi | 382 | Prothrombin | 3.4.21.5 | 0.450 | |
| 2e1m | FAD | L-glutamate oxidase | / | 0.450 | |
| 2ed3 | SAH | Diphthine synthase | / | 0.450 | |
| 2el0 | SAH | Diphthine synthase | / | 0.450 | |
| 2g94 | ZPQ | Beta-secretase 1 | 3.4.23.46 | 0.450 | |
| 2hdh | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.450 | |
| 2p2x | SAH | Diphthine synthase | / | 0.450 | |
| 2q1t | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.450 | |
| 2vij | C44 | Beta-secretase 1 | 3.4.23.46 | 0.450 | |
| 2w9h | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.450 | |
| 2wd8 | VGF | Pteridine reductase | / | 0.450 | |
| 2wip | P49 | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.450 | |
| 3lxp | IZA | Non-receptor tyrosine-protein kinase TYK2 | 2.7.10.2 | 0.450 | |
| 3o0q | ADN | Vitamin B12-dependent ribonucleotide reductase | / | 0.450 | |
| 3p84 | FMN | Pentaerythritol tetranitrate reductase | / | 0.450 | |
| 4hp8 | NAP | 2-deoxy-D-gluconate 3-dehydrogenase | / | 0.450 | |
| 4m49 | 22Y | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.450 | |
| 4rnw | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.450 | |
| 4x9m | FAD | Uncharacterized protein MG039 homolog | / | 0.450 | |
| 5dw6 | 0T1 | Succinyl-CoA:acetate CoA-transferase | / | 0.450 | |
| 1cul | FOK | Adenylate cyclase type 2 | / | 0.449 | |
| 1cul | FOK | Adenylate cyclase type 5 | / | 0.449 | |
| 1i59 | ANP | Chemotaxis protein CheA | 2.7.13.3 | 0.449 | |
| 1kfb | IGP | Tryptophan synthase alpha chain | / | 0.449 | |
| 1ngs | TPP | Transketolase 1 | 2.2.1.1 | 0.449 | |
| 1nvq | UCN | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.449 | |
| 2eeq | SAH | Diphthine synthase | / | 0.449 | |
| 2ek4 | SAH | Diphthine synthase | / | 0.449 | |
| 2fa3 | ACO | Hydroxymethylglutaryl-CoA synthase | / | 0.449 | |
| 2fj1 | CTC | Tetracycline repressor protein class D | / | 0.449 | |
| 2uuv | FAD | Alkyldihydroxyacetonephosphate synthase | 2.5.1.26 | 0.449 | |
| 2xpu | TDC | Tetracycline repressor protein class D | / | 0.449 | |
| 3kjs | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.449 | |
| 3mkn | DNB | Pyrimidine-specific ribonucleoside hydrolase RihB | / | 0.449 | |
| 3r88 | 14F | Anthranilate phosphoribosyltransferase | / | 0.449 | |
| 3zcx | NAD | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.449 | |
| 3zu2 | NAI | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.449 | |
| 4c8e | C5P | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | / | 0.449 | |
| 4cr8 | NAD | N-acylmannosamine 1-dehydrogenase | 1.1.1.233 | 0.449 | |
| 4du8 | 2P0 | Mevalonate diphosphate decarboxylase | / | 0.449 | |
| 4kuo | RBF | Putative blue-light photoreceptor | / | 0.449 | |
| 4wda | 2AM | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.449 | |
| 5ecc | NAP | Dehydrofolate reductase type I | / | 0.449 | |
| 1bim | 0QB | Renin | 3.4.23.15 | 0.448 | |
| 1bxk | NAD | dTDP-glucose 4,6-dehydratase 2 | / | 0.448 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.448 | |
| 1nhh | ANP | DNA mismatch repair protein MutL | / | 0.448 | |
| 2dsi | SAH | Diphthine synthase | / | 0.448 | |
| 2g1s | 4IG | Renin | 3.4.23.15 | 0.448 | |
| 2o1s | TDP | 1-deoxy-D-xylulose-5-phosphate synthase | 2.2.1.7 | 0.448 | |
| 2o7o | DXT | Tetracycline repressor protein class D | / | 0.448 | |
| 2pvn | P63 | Casein kinase II subunit alpha | 2.7.11.1 | 0.448 | |
| 2x0r | NAD | Malate dehydrogenase | / | 0.448 | |
| 3cib | 314 | Beta-secretase 1 | 3.4.23.46 | 0.448 | |
| 3cic | 316 | Beta-secretase 1 | 3.4.23.46 | 0.448 | |
| 3evb | SAH | Genome polyprotein | 2.1.1.56 | 0.448 | |
| 3g2l | LEW | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.448 | |
| 3iod | A6D | Pantothenate synthetase | 6.3.2.1 | 0.448 | |
| 4gh6 | LUO | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.448 | |
| 4rnu | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.448 | |
| 4u0m | ATP | Cyclic GMP-AMP synthase | / | 0.448 | |
| 4y57 | F63 | Endothiapepsin | 3.4.23.22 | 0.448 | |
| 4zu4 | 4TG | WxcM-like protein | / | 0.448 | |
| 1dxq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.447 | |
| 1ep3 | FMN | Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit | 1.3.1.14 | 0.447 | |
| 1g1a | NAD | dTDP-glucose 4,6-dehydratase | / | 0.447 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.447 | |
| 1ipe | NDP | Tropinone reductase 2 | 1.1.1.236 | 0.447 | |
| 1kp2 | ATP | Argininosuccinate synthase | 6.3.4.5 | 0.447 | |
| 1l8a | TDP | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.447 | |
| 1o2g | 696 | Prothrombin | 3.4.21.5 | 0.447 | |
| 2dxi | ATP | Glutamate--tRNA ligase | 6.1.1.17 | 0.447 | |
| 2fzn | FAD | Bifunctional protein PutA | 1.5.5.2 | 0.447 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.447 | |
| 2w6q | OA5 | Biotin carboxylase | 6.3.4.14 | 0.447 | |
| 3dyn | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.447 | |
| 3eo8 | FMN | Putative nitroreductase | / | 0.447 | |
| 3fwj | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.447 | |
| 3had | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.447 | |
| 3hyg | 099 | A disintegrin and metalloproteinase with thrombospondin motifs 5 | 3.4.24 | 0.447 | |
| 3img | BZ3 | Pantothenate synthetase | 6.3.2.1 | 0.447 | |
| 3jun | AJD | Phenazine biosynthesis protein A/B | / | 0.447 | |
| 3lsi | FAD | Pyranose 2-oxidase | / | 0.447 | |
| 3lxi | CAM | Cytochrome P450 | / | 0.447 | |
| 3ndc | SAH | Precorrin-4 C(11)-methyltransferase | 2.1.1.133 | 0.447 | |
| 3qwp | SAM | Histone-lysine N-methyltransferase SMYD3 | 2.1.1.43 | 0.447 | |
| 3s1d | ZIR | Cytokinin dehydrogenase 1 | 1.5.99.12 | 0.447 | |
| 3udn | 09B | Beta-secretase 1 | 3.4.23.46 | 0.447 | |
| 3zkd | ANP | DNA gyrase subunit B | / | 0.447 | |
| 4b5d | SW4 | Achbp | / | 0.447 | |
| 1dis | BDM | Dihydrofolate reductase | 1.5.1.3 | 0.446 | |
| 1e5q | NDP | Saccharopine dehydrogenase [NADP(+), L-glutamate-forming] | 1.5.1.10 | 0.446 | |
| 1i6k | TYM | Tryptophan--tRNA ligase | 6.1.1.2 | 0.446 | |
| 1qf5 | RPL | Adenylosuccinate synthetase | / | 0.446 | |
| 1suo | CPZ | Cytochrome P450 2B4 | 1.14.14.1 | 0.446 | |
| 1t2c | NAI | L-lactate dehydrogenase | 1.1.1.27 | 0.446 | |
| 1uu9 | BI3 | 3-phosphoinositide-dependent protein kinase 1 | 2.7.11.1 | 0.446 | |
| 1zgv | 501 | Prothrombin | 3.4.21.5 | 0.446 | |
| 2b7a | IZA | Tyrosine-protein kinase JAK2 | / | 0.446 | |
| 2ehl | SAH | Diphthine synthase | / | 0.446 | |
| 2he5 | NDP | Aldo-keto reductase family 1 member C21 | 1.1.1 | 0.446 | |
| 2p8u | COA | Hydroxymethylglutaryl-CoA synthase, cytoplasmic | 2.3.3.10 | 0.446 | |
| 2rqf | JH3 | Hemolymph juvenile hormone binding protein | / | 0.446 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.446 | |
| 2zcv | NDP | Quinone oxidoreductase 2 | 1.6.5.2 | 0.446 | |
| 3a0t | ADP | Sensor histidine kinase | / | 0.446 | |
| 3aez | GDP | Pantothenate kinase | 2.7.1.33 | 0.446 | |
| 3k4n | FAD | Pyranose 2-oxidase | / | 0.446 | |
| 3rq6 | APR | ADP-dependent (S)-NAD(P)H-hydrate dehydratase | / | 0.446 | |
| 3sqz | COA | Putative hydroxymethylglutaryl-CoA synthase | / | 0.446 | |
| 3u8l | 09Q | Acetylcholine-binding protein | / | 0.446 | |
| 3vsw | R31 | Renin | 3.4.23.15 | 0.446 | |
| 4emd | C5P | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | / | 0.446 | |
| 4f31 | KAI | Glutamate receptor 3 | / | 0.446 | |
| 4qmy | STU | Serine/threonine-protein kinase 24 | 2.7.11.1 | 0.446 | |
| 4y0k | NAP | AntE | / | 0.446 | |
| 4y3q | F02 | Endothiapepsin | 3.4.23.22 | 0.446 | |
| 4yco | FMN | tRNA-dihydrouridine(16) synthase | / | 0.446 | |
| 4yvj | SFG | tRNA (guanine-N(1)-)-methyltransferase | 2.1.1.228 | 0.446 | |
| 1gj5 | 130 | Prothrombin | 3.4.21.5 | 0.445 | |
| 1piw | NAP | NADP-dependent alcohol dehydrogenase 6 | 1.1.1.2 | 0.445 | |
| 1rfg | GMP | Purine nucleoside phosphorylase | 2.4.2.1 | 0.445 | |
| 1yjq | NAP | 2-dehydropantoate 2-reductase | 1.1.1.169 | 0.445 | |
| 1zap | A70 | Candidapepsin-2 | 3.4.23.24 | 0.445 | |
| 2c59 | NAD | GDP-mannose 3,5-epimerase | 5.1.3.18 | 0.445 | |
| 2e17 | SAH | Diphthine synthase | / | 0.445 | |
| 2eh5 | SAH | Diphthine synthase | / | 0.445 | |
| 2hxz | H7J | Cathepsin S | 3.4.22.27 | 0.445 | |
| 2nni | MTK | Cytochrome P450 2C8 | / | 0.445 | |
| 2pck | SAH | Diphthine synthase | / | 0.445 | |
| 2pcm | SAH | Diphthine synthase | / | 0.445 | |
| 2tys | PLT | Tryptophan synthase beta chain | 4.2.1.20 | 0.445 | |
| 2vhz | NAI | Alanine dehydrogenase | 1.4.1.1 | 0.445 | |
| 2xfy | ACX | Beta-amylase | 3.2.1.2 | 0.445 | |
| 2yy8 | SAM | tRNA (cytidine(56)-2'-O)-methyltransferase | / | 0.445 | |
| 2z6d | FMN | Phototropin-2 | 2.7.11.1 | 0.445 | |
| 3aeb | FAD | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | / | 0.445 | |
| 3gka | FMN | N-ethylmaleimide reductase | / | 0.445 | |
| 3orf | NAD | Dihydropteridine reductase | 1.5.1.34 | 0.445 | |
| 3t8v | BTJ | M1 family aminopeptidase | 3.4.11 | 0.445 | |
| 3w8e | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.445 | |
| 3zkb | ANP | DNA gyrase subunit B | / | 0.445 | |
| 4c04 | SFG | Protein arginine N-methyltransferase 6 | / | 0.445 | |
| 4clo | NAP | Pteridine reductase | / | 0.445 | |
| 4de1 | 0J6 | Beta-lactamase | / | 0.445 | |
| 4fv7 | E94 | Mitogen-activated protein kinase 1 | 2.7.11.24 | 0.445 | |
| 4kgk | GTP | Uncharacterized protein | / | 0.445 | |
| 4r1l | ADP | Phenylacetate-coenzyme A ligase | / | 0.445 | |
| 4rvn | COA | Phenylacetate-coenzyme A ligase | / | 0.445 | |
| 1dhr | NAD | Dihydropteridine reductase | 1.5.1.34 | 0.444 | |
| 1h66 | RH1 | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.444 | |
| 1ib0 | NAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.444 | |
| 1kmy | BPY | Biphenyl-2,3-diol 1,2-dioxygenase | 1.13.11.39 | 0.444 | |
| 1n9l | FMN | Putative blue light receptor | / | 0.444 | |
| 1ykg | FMN | Sulfite reductase [NADPH] flavoprotein alpha-component | / | 0.444 | |
| 2e07 | SAH | Diphthine synthase | / | 0.444 | |
| 2jdt | I5S | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.444 | |
| 2nmt | MIM | Glycylpeptide N-tetradecanoyltransferase | 2.3.1.97 | 0.444 | |
| 3b05 | IPE | Isopentenyl-diphosphate delta-isomerase | / | 0.444 | |
| 3b9x | NOS | Pyrimidine-specific ribonucleoside hydrolase RihB | 3.2.2.8 | 0.444 | |
| 3cid | 318 | Beta-secretase 1 | 3.4.23.46 | 0.444 | |
| 4an4 | DUD | Putative glycosyl transferase | / | 0.444 | |
| 4bie | IE6 | Mitogen-activated protein kinase kinase kinase 5 | 2.7.11.25 | 0.444 | |
| 4co4 | ATP | Nitrogen regulatory protein P-II 1 | / | 0.444 | |
| 4dh6 | 0KN | Beta-secretase 1 | 3.4.23.46 | 0.444 | |
| 4dt9 | GMP | APH(2'')-Id | / | 0.444 | |
| 4iwo | 1H4 | Serine/threonine-protein kinase TBK1 | 2.7.11.1 | 0.444 | |
| 4kgn | SAH | tRNA (cytidine(34)-2'-O)-methyltransferase | / | 0.444 | |
| 4l16 | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.444 | |
| 4xnw | 2ID | P2Y purinoceptor 1 | / | 0.444 | |
| 1di8 | DTQ | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.443 | |
| 1ea0 | FMN | Glutamate synthase [NADPH] large chain | 1.4.1.13 | 0.443 | |
| 1h2h | NAD | L-aspartate dehydrogenase | 1.4.1.21 | 0.443 | |
| 1h74 | ADP | Homoserine kinase | 2.7.1.39 | 0.443 | |
| 1kbi | FMN | Cytochrome b2, mitochondrial | 1.1.2.3 | 0.443 | |
| 1me6 | IVS | Plasmepsin-2 | 3.4.23.39 | 0.443 | |
| 1rkw | PNT | HTH-type transcriptional regulator QacR | / | 0.443 | |
| 2cmo | M1L | Glutamate receptor 2 | / | 0.443 | |
| 2daa | DCS | D-alanine aminotransferase | 2.6.1.21 | 0.443 | |
| 2hiz | LIJ | Beta-secretase 1 | 3.4.23.46 | 0.443 | |
| 2vr1 | ATF | Biotin carboxylase | 6.3.4.14 | 0.443 | |
| 2vwq | NAP | Glucose 1-dehydrogenase | / | 0.443 | |
| 2w6m | OA1 | Biotin carboxylase | 6.3.4.14 | 0.443 | |
| 2wez | ZYE | Beta-secretase 1 | 3.4.23.46 | 0.443 | |
| 3b7k | COA | Acyl-coenzyme A thioesterase 12 | 3.1.2.1 | 0.443 | |
| 3bbd | SAH | Ribosomal RNA small subunit methyltransferase Nep1 | 2.1.1 | 0.443 | |
| 3dha | C6L | N-acyl homoserine lactonase AiiA | 3.1.1.81 | 0.443 | |
| 3exh | TPP | Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial | 1.2.4.1 | 0.443 | |
| 3exh | TPP | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial | 1.2.4.1 | 0.443 | |
| 3img | BZ2 | Pantothenate synthetase | 6.3.2.1 | 0.443 | |
| 3iob | A4D | Pantothenate synthetase | 6.3.2.1 | 0.443 | |
| 3mpt | 1GK | Mitogen-activated protein kinase 14 | / | 0.443 | |
| 3sf6 | FDA | Glutaryl-CoA dehydrogenase | / | 0.443 | |
| 4bmp | FMN | Protein NrdI | / | 0.443 | |
| 4dmm | NAP | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 0.443 | |
| 4ek1 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.443 | |
| 4fv6 | E57 | Mitogen-activated protein kinase 1 | 2.7.11.24 | 0.443 | |
| 4r38 | RBF | Blue-light-activated histidine kinase 2 | 2.7.13.3 | 0.443 | |
| 4z26 | FAD | Putative GMC-type oxidoreductase R135 | 1 | 0.443 | |
| 1g28 | FMN | PHY3 | / | 0.442 | |
| 1iol | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.442 | |
| 1mvt | DTM | Dihydrofolate reductase | 1.5.1.3 | 0.442 | |
| 1s16 | ANP | DNA topoisomerase 4 subunit B | / | 0.442 | |
| 2c94 | TSF | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.442 | |
| 2g1r | 3IG | Renin | 3.4.23.15 | 0.442 | |
| 2gvd | FKP | Adenylate cyclase type 2 | / | 0.442 | |
| 2gvd | FKP | Adenylate cyclase type 5 | / | 0.442 | |
| 2huq | SAH | Diphthine synthase | / | 0.442 | |
| 2p2b | PRX | Acetyl-coenzyme A synthetase | / | 0.442 | |
| 3gol | XND | Genome polyprotein | 2.7.7.48 | 0.442 | |
| 3h06 | VBP | Glutamate receptor 2 | / | 0.442 | |
| 3koy | Z97 | D-ornithine 4,5-aminomutase subunit beta | / | 0.442 | |
| 3oqk | S52 | Renin | 3.4.23.15 | 0.442 | |
| 3prs | RIT | Endothiapepsin | 3.4.23.22 | 0.442 | |
| 3pww | ROC | Endothiapepsin | 3.4.23.22 | 0.442 | |
| 3qwc | 98P | Prothrombin | 3.4.21.5 | 0.442 | |
| 3r6s | CMP | CRP-like cAMP-activated global transcriptional regulator | / | 0.442 | |
| 3ufl | 508 | Beta-secretase 1 | 3.4.23.46 | 0.442 | |
| 3x2w | ATP | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.442 | |
| 4ihl | 1F5 | 14-3-3 protein zeta/delta | / | 0.442 | |
| 4k28 | NAD | Shikimate dehydrogenase family protein | / | 0.442 | |
| 4yai | NAI | C alpha-dehydrogenase | / | 0.442 | |
| 5ein | NAP | [LysW]-L-2-aminoadipate 6-phosphate reductase | / | 0.442 | |
| 1aj2 | 2PH | Dihydropteroate synthase | / | 0.441 | |
| 1cjv | DAD | Adenylate cyclase type 2 | / | 0.441 | |
| 1cjv | DAD | Adenylate cyclase type 5 | / | 0.441 | |
| 1cnf | FAD | Nitrate reductase [NADH] | 1.7.1.1 | 0.441 | |
| 1dr2 | TAP | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 1h5q | NAP | NADP-dependent mannitol dehydrogenase | 1.1.1.138 | 0.441 | |
| 1juv | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 1n4p | CYS_VAL_ILE_LEU_GER | Geranylgeranyl transferase type-1 subunit beta | 2.5.1.59 | 0.441 | |
| 1ri1 | GTG | mRNA cap guanine-N7 methyltransferase | 2.1.1.56 | 0.441 | |
| 2bfr | ADP | [Protein ADP-ribosylglutamate] hydrolase AF_1521 | 3.2.2 | 0.441 | |
| 2bro | DF2 | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.441 | |
| 2bxm | IMN | Serum albumin | / | 0.441 | |
| 2gna | GDU | UDP-N-acetylglucosamine 4,6-dehydratase (inverting) | 4.2.1.115 | 0.441 | |
| 2gr0 | FAD | Ferredoxin reductase | / | 0.441 | |
| 2v16 | C47 | Renin | 3.4.23.15 | 0.441 | |
| 2ztl | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.441 | |
| 2zz0 | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.441 | |
| 3hek | BD0 | Heat shock protein HSP 90-alpha | / | 0.441 | |
| 3lsm | SFD | Pyranose 2-oxidase | / | 0.441 | |
| 3mt8 | 17T | Glycogen phosphorylase, muscle form | 2.4.1.1 | 0.441 | |
| 3pgi | F41 | Endothiapepsin | 3.4.23.22 | 0.441 | |
| 3t7x | 4SH | Endothiapepsin | 3.4.23.22 | 0.441 | |
| 3u7l | UDB | Peptide deformylase | / | 0.441 | |
| 3vo8 | GDP | Cell division protein FtsZ | / | 0.441 | |
| 3zxz | KRW | Hepatocyte growth factor receptor | 2.7.10.1 | 0.441 | |
| 4a7b | 3W5 | Collagenase 3 | 3.4.24 | 0.441 | |
| 4bfu | ZVU | Pantothenate kinase | 2.7.1.33 | 0.441 | |
| 4ead | 0NP | Thymidine phosphorylase | 2.4.2.4 | 0.441 | |
| 4fiz | CUE | 17beta-hydroxysteroid dehydrogenase | / | 0.441 | |
| 4fkl | CK2 | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.441 | |
| 4hy6 | FJ1 | Heat shock protein HSP 90-alpha | / | 0.441 | |
| 4iql | FMN | Enoyl-(Acyl-carrier-protein) reductase II | / | 0.441 | |
| 4jb1 | FAD | UDP-N-acetylenolpyruvoylglucosamine reductase | / | 0.441 | |
| 4mub | OAQ | Sulfotransferase oxamniquine resistance protein | / | 0.441 | |
| 4nmd | FDA | Bifunctional protein PutA | / | 0.441 | |
| 4wfr | 2AM | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.441 | |
| 1a8p | FAD | Ferredoxin--NADP reductase | / | 0.440 | |
| 1dlj | UGA | UDP-glucose 6-dehydrogenase | / | 0.440 | |
| 1g63 | FMN | Epidermin decarboxylase | 4.1.1 | 0.440 | |
| 1j7k | ATP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.440 | |
| 1m76 | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.440 | |
| 1rt9 | IMH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.440 | |
| 1rx1 | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.440 | |
| 1y2c | 3DE | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.440 | |
| 1z7y | AA5 | Cysteine synthase 1 | 2.5.1.47 | 0.440 | |
| 2a2d | ANP | N-acetylgalactosamine kinase | 2.7.1.157 | 0.440 | |
| 2dhf | DZF | Dihydrofolate reductase | 1.5.1.3 | 0.440 | |
| 2gbl | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.440 | |
| 2h2q | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.440 | |
| 2iko | 7IG | Renin | 3.4.23.15 | 0.440 | |
| 2iyi | FMN | AppA, antirepressor of ppsR, sensor of blue light | / | 0.440 | |
| 2okc | SAM | Probable type I restriction enzyme BthVORF4518P M protein | 2.1.1.72 | 0.440 | |
| 2w14 | WR2 | Snake venom metalloproteinase BaP1 | 3.4.24 | 0.440 | |
| 2wf1 | ZY1 | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 3bi6 | 396 | Wee1-like protein kinase | 2.7.10.2 | 0.440 | |
| 3cgd | COA | Coenzyme A disulfide reductase | / | 0.440 | |
| 3fr5 | I4A | Fatty acid-binding protein, adipocyte | / | 0.440 | |
| 3ibq | ATP | Pyridoxal kinase | / | 0.440 | |
| 3ixp | 834 | Ecdysone receptor | / | 0.440 | |
| 3jsi | WTC | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.440 | |
| 3k4c | FAD | Pyranose 2-oxidase | / | 0.440 | |
| 3o8g | O8G | HTH-type transcriptional regulator EthR | / | 0.440 | |
| 3t3q | 9PL | Cytochrome P450 2A6 | 1.14.13 | 0.440 | |
| 3wrj | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.440 | |
| 4a86 | 2AN | Major pollen allergen Bet v 1-A | / | 0.440 | |
| 4dbz | NDP | Putative ketoacyl reductase | 1.3.1 | 0.440 | |
| 4ddh | MS0 | Pantothenate synthetase | 6.3.2.1 | 0.440 | |
| 4emt | C2E | Stimulator of interferon genes protein | / | 0.440 | |
| 4f1y | CNI | Glutamate receptor 3 | / | 0.440 | |
| 4fuf | 8UP | Urokinase-type plasminogen activator | 3.4.21.73 | 0.440 | |
| 4k5o | 1OT | M1 family aminopeptidase | 3.4.11 | 0.440 | |
| 4kxj | P34 | Nucleoprotein | / | 0.440 | |
| 4l2i | FAD | Electron transfer flavoprotein alpha/beta-subunit | / | 0.440 | |
| 4opi | FDA | Conserved Archaeal protein | / | 0.440 | |
| 4tyq | AP5 | Adenylate kinase | / | 0.440 | |
| 4z9r | FMN | Omega-3 polyunsaturated fatty acid synthase subunit PfaD | / | 0.440 | |
| 5e7o | MD1 | DMSO reductase family type II enzyme, molybdopterin subunit | / | 0.440 |