sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2hs6 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2hs6 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 1.000 | |
| 1icp | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.516 | |
| 1ics | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.503 | |
| 2hs8 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.502 | |
| 2abb | FMN | Pentaerythritol tetranitrate reductase | / | 0.498 | |
| 4rnv | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.496 | |
| 3hgs | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.492 | |
| 4tmb | FMN | Old yellow enzyme | / | 0.490 | |
| 4rnw | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.489 | |
| 3p62 | FMN | Pentaerythritol tetranitrate reductase | / | 0.485 | |
| 2q3r | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.484 | |
| 4e2d | FMN | Dehydrogenase | / | 0.476 | |
| 1h50 | FMN | Pentaerythritol tetranitrate reductase | / | 0.472 | |
| 1vji | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.472 | |
| 4jic | FMN | GTN Reductase | / | 0.472 | |
| 3hgo | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.471 | |
| 4a3u | FMN | NADH:flavin oxidoreductase/NADH oxidase | / | 0.470 | |
| 1bwl | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.469 | |
| 4tmc | FMN | Old yellow enzyme | / | 0.469 | |
| 1icq | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.464 | |
| 3aty | FMN | Prostaglandin F2a synthase | / | 0.464 | |
| 3p82 | FMN | Pentaerythritol tetranitrate reductase | / | 0.462 | |
| 1h63 | FMN | Pentaerythritol tetranitrate reductase | / | 0.461 | |
| 3hgr | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.461 | |
| 1bwk | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.460 | |
| 3f03 | FMN | Pentaerythritol tetranitrate reductase | / | 0.460 | |
| 1vyr | FMN | Pentaerythritol tetranitrate reductase | / | 0.458 | |
| 3atz | FMN | Prostaglandin F2a synthase | / | 0.455 | |
| 3p74 | FMN | Pentaerythritol tetranitrate reductase | / | 0.452 | |
| 1q45 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.450 | |
| 1nuq | NXX | Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 | / | 0.447 | |
| 4df2 | FMN | NADPH dehydrogenase | / | 0.447 | |
| 1oyc | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.444 |