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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gr1FADFerredoxin reductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2gr1FADFerredoxin reductase/1.000
4h4vFADBiphenyl dioxygenase ferredoxin reductase subunit/0.643
4h4rFADBiphenyl dioxygenase ferredoxin reductase subunit/0.640
4h4tFADBiphenyl dioxygenase ferredoxin reductase subunit/0.636
2gqwFADFerredoxin reductase/0.615
4h4sFADBiphenyl dioxygenase ferredoxin reductase subunit/0.614
2gr3FADFerredoxin reductase/0.612
4h4zFADBiphenyl dioxygenase ferredoxin reductase subunit/0.604
4h4pFADBiphenyl dioxygenase ferredoxin reductase subunit/0.598
4h4xFADBiphenyl dioxygenase ferredoxin reductase subunit/0.514
4h50FADBiphenyl dioxygenase ferredoxin reductase subunit/0.498
3ef6FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component1.18.1.30.481
1m6iFADApoptosis-inducing factor 1, mitochondrial1.1.10.468
4h4qFADBiphenyl dioxygenase ferredoxin reductase subunit/0.465