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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gesCOKPantothenate kinase2.7.1.33

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2gesCOKPantothenate kinase2.7.1.331.000
2getCOKPantothenate kinase2.7.1.330.627
2zsaADPPantothenate kinase2.7.1.330.607
2geuCOKPantothenate kinase2.7.1.330.586
2zsbADPPantothenate kinase2.7.1.330.586
4bfsZVSPantothenate kinase2.7.1.330.583
3af0GDPPantothenate kinase2.7.1.330.577
3aezGDPPantothenate kinase2.7.1.330.573
3af3GCPPantothenate kinase2.7.1.330.558
2zsdCOAPantothenate kinase2.7.1.330.554
2zs8ADPPantothenate kinase2.7.1.330.553
2zs9ADPPantothenate kinase2.7.1.330.553
3af2ACPPantothenate kinase2.7.1.330.540
3af4GCPPantothenate kinase2.7.1.330.536
3af1GDPPantothenate kinase2.7.1.330.534
2gevCOKPantothenate kinase2.7.1.330.522
4bftZVTPantothenate kinase2.7.1.330.510
1esmCOAPantothenate kinase2.7.1.330.503
2zseACPPantothenate kinase2.7.1.330.497
4bfvZVVPantothenate kinase2.7.1.330.481
4bfxZVXPantothenate kinase2.7.1.330.476
4bfwZVWPantothenate kinase2.7.1.330.443