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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fznFADBifunctional protein PutA1.5.5.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2fznFADBifunctional protein PutA1.5.5.21.000
2fzmFADBifunctional protein PutA1.5.5.20.798
1tj1FADBifunctional protein PutA1.5.5.20.705
1tj2FADBifunctional protein PutA1.5.5.20.679
3e2sFADBifunctional protein PutA1.5.5.20.617
3hazFADBifunctional protein PutA/0.571
4q73FADBifunctional protein PutA/0.561
4q72FADBifunctional protein PutA/0.554
4q71FADBifunctional protein PutA/0.542
1tj0FADBifunctional protein PutA1.5.5.20.532