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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2fvc888Polyprotein

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2fvc888Polyprotein/1.000
3co93MSGenome polyprotein2.7.7.480.615
4ih71ERGenome polyprotein2.7.7.480.608
3e51N35Genome polyprotein2.7.7.480.607
3cwj321Genome polyprotein2.7.7.480.606
3uph0C1Genome polyprotein2.7.7.480.602
2gc8885Polyprotein/0.600
3u4o08EGenome polyprotein2.7.7.480.599
3u4r08FGenome polyprotein2.7.7.480.594
3d5m4MSGenome polyprotein2.7.7.480.593
3h5uH5UGenome polyprotein2.7.7.480.592
3tyvHI3Genome polyprotein2.7.7.480.590
3g86T18Genome polyprotein2.7.7.480.585
3h5sH5SGenome polyprotein2.7.7.480.583
4iz02BIGenome polyprotein2.7.7.480.581
3golXNDGenome polyprotein2.7.7.480.580
3cvkN34Genome polyprotein2.7.7.480.573
3gnwXNCGenome polyprotein2.7.7.480.569
3bsa1PDGenome polyprotein2.7.7.480.568
2yoj8Y6Genome polyprotein2.7.7.480.567
3ska053Genome polyprotein2.7.7.480.566
3upi0C2Genome polyprotein2.7.7.480.564
3csoXNIGenome polyprotein2.7.7.480.563
4mk728OGenome polyprotein2.7.7.480.561
4eaw0NQGenome polyprotein2.7.7.480.560
3hkyIX6Genome polyprotein2.7.7.480.559
4ih61EPGenome polyprotein2.7.7.480.559
1z4uPH9Polyprotein/0.557
3h59H59Genome polyprotein2.7.7.480.555
3br9DEYGenome polyprotein2.7.7.480.546
3d28B34Genome polyprotein2.7.7.480.545
3ske054Genome polyprotein2.7.7.480.543
3h98B5PGenome polyprotein2.7.7.480.542
3gynB42Genome polyprotein2.7.7.480.541
3h2lYAKGenome polyprotein2.7.7.480.541
3fqk79ZGenome polyprotein2.7.7.480.534
4mk928RGenome polyprotein2.7.7.480.533
3cdeN3HGenome polyprotein2.7.7.480.532
4mk828QGenome polyprotein2.7.7.480.524
4mka2AYGenome polyprotein2.7.7.480.522
3gnvXNZGenome polyprotein2.7.7.480.498
3hkwIX6Genome polyprotein2.7.7.480.498
1yvfPH7Polyprotein/0.469