sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2exl | GDM | Endoplasmin |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2exl | GDM | Endoplasmin | / | 1.000 | |
| 2vw5 | BC6 | ATP-dependent molecular chaperone HSP82 | / | 0.513 | |
| 3q5l | KX2 | Heat shock protein 83-1 | / | 0.507 | |
| 1u0z | RDC | Endoplasmin | / | 0.473 | |
| 1osf | KOS | Heat shock protein HSP 90-alpha | / | 0.471 | |
| 2wer | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.471 | |
| 1yet | GDM | Heat shock protein HSP 90-alpha | / | 0.466 | |
| 2fyp | RDE | Endoplasmin | / | 0.463 | |
| 2hch | N5A | Endoplasmin | / | 0.462 | |
| 1uye | PU9 | Heat shock protein HSP 90-alpha | / | 0.457 | |
| 2gfd | RDA | Endoplasmin | / | 0.448 | |
| 4asf | 62U | ATP-dependent molecular chaperone HSP82 | / | 0.447 | |
| 3k98 | 1RC | Heat shock protein HSP 90-alpha | / | 0.443 | |
| 2byi | 2DD | Heat shock protein HSP 90-alpha | / | 0.442 | |
| 2gqp | PA7 | Endoplasmin | / | 0.442 | |
| 4asg | 814 | ATP-dependent molecular chaperone HSP82 | / | 0.442 |