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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ejkSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2ejkSAHDiphthine synthase/1.000
2eniSAHDiphthine synthase/0.816
2p6kSAHDiphthine synthase/0.784
2p5fSAHDiphthine synthase/0.782
2dv7SAHDiphthine synthase/0.781
2p5cSAHDiphthine synthase/0.777
2p6dSAHDiphthine synthase/0.773
2dxvSAHDiphthine synthase/0.771
2dxwSAHDiphthine synthase/0.770
2e7rSAHDiphthine synthase/0.769
2ed5SAHDiphthine synthase/0.765
2p2xSAHDiphthine synthase/0.762
2ehlSAHDiphthine synthase/0.759
2emrSAHDiphthine synthase/0.752
2egsSAHDiphthine synthase/0.748
2e8sSAHDiphthine synthase/0.742
2dxxSAHDiphthine synthase/0.725
2dsiSAHDiphthine synthase/0.719
2pb5SAHDiphthine synthase/0.717
2pcgSAHDiphthine synthase/0.712
2el0SAHDiphthine synthase/0.708
2dsgSAHDiphthine synthase/0.706
2eh5SAHDiphthine synthase/0.705
2emuSAHDiphthine synthase/0.703
2egbSAHDiphthine synthase/0.702
2dv4SAHDiphthine synthase/0.701
2pcmSAHDiphthine synthase/0.698
2ekaSAHDiphthine synthase/0.696
2owkSAHDiphthine synthase/0.692
2eleSAHDiphthine synthase/0.688
2p6iSAHDiphthine synthase/0.687
2eglSAHDiphthine synthase/0.676
2owgSAHDiphthine synthase/0.672
2pckSAHDiphthine synthase/0.672
2e08SAHDiphthine synthase/0.667
1wngSAHDiphthine synthase/0.658
2e8qSAHDiphthine synthase/0.654
2ek7SAHDiphthine synthase/0.651
2pb4SAHDiphthine synthase/0.650
2pchSAHDiphthine synthase/0.649
2eh2SAHDiphthine synthase/0.646
2owuSAHDiphthine synthase/0.643
2dv5SAHDiphthine synthase/0.642
2eeqSAHDiphthine synthase/0.635
2hutSAHDiphthine synthase/0.625
2e8rSAHDiphthine synthase/0.624
2p9dSAHDiphthine synthase/0.618
2huxSAHDiphthine synthase/0.617
2e17SAHDiphthine synthase/0.613
2e8hSAHDiphthine synthase/0.612
2dv3SAHDiphthine synthase/0.610
2hr8SAHDiphthine synthase/0.608
1vceSAHDiphthine synthase/0.604
2huvSAHDiphthine synthase/0.604
2pciSAHDiphthine synthase/0.604
2ek2SAHDiphthine synthase/0.601
2ejjSAHDiphthine synthase/0.600
2z6rSAHDiphthine synthase/0.597
2el3SAHDiphthine synthase/0.595
2en5SAHDiphthine synthase/0.595
2pb6SAHDiphthine synthase/0.594
2owvSAHDiphthine synthase/0.592
2e4nSAHDiphthine synthase/0.589
2e16SAHDiphthine synthase/0.584
2ek3SAHDiphthine synthase/0.581
2eldSAHDiphthine synthase/0.575
2e15SAHDiphthine synthase/0.568
2eh4SAHDiphthine synthase/0.563
2pcaSAHDiphthine synthase/0.560
2dekSAHDiphthine synthase/0.559
2e07SAHDiphthine synthase/0.551
2huqSAHDiphthine synthase/0.551
2owfSAHDiphthine synthase/0.548
2ek4SAHDiphthine synthase/0.546
2p6lSAHDiphthine synthase/0.539
2dshSAHDiphthine synthase/0.531
2ed3SAHDiphthine synthase/0.516
2ejzSAHDiphthine synthase/0.491
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.465
2gjnFMNNitronate monooxygenase1.13.12.160.445
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.443
1xe55FEPlasmepsin-23.4.23.390.442
1u8vFAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase/0.440
3tr05GPGuanylate kinase/0.440