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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ejjSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2ejjSAHDiphthine synthase/1.000
2e07SAHDiphthine synthase/0.774
2eh4SAHDiphthine synthase/0.721
2dshSAHDiphthine synthase/0.716
2owuSAHDiphthine synthase/0.713
1wngSAHDiphthine synthase/0.712
2huqSAHDiphthine synthase/0.694
2e4nSAHDiphthine synthase/0.663
2huvSAHDiphthine synthase/0.663
2ed3SAHDiphthine synthase/0.659
2owgSAHDiphthine synthase/0.651
2z6rSAHDiphthine synthase/0.650
2eniSAHDiphthine synthase/0.645
2e08SAHDiphthine synthase/0.641
2p6iSAHDiphthine synthase/0.640
2dxxSAHDiphthine synthase/0.638
2el3SAHDiphthine synthase/0.638
2p9dSAHDiphthine synthase/0.638
2pb5SAHDiphthine synthase/0.635
2dv3SAHDiphthine synthase/0.634
2pcaSAHDiphthine synthase/0.629
2eeqSAHDiphthine synthase/0.625
2p2xSAHDiphthine synthase/0.625
2el0SAHDiphthine synthase/0.624
2dv4SAHDiphthine synthase/0.622
2e17SAHDiphthine synthase/0.617
2p5cSAHDiphthine synthase/0.613
2egbSAHDiphthine synthase/0.611
2p6lSAHDiphthine synthase/0.611
2e8hSAHDiphthine synthase/0.609
2owvSAHDiphthine synthase/0.609
2ed5SAHDiphthine synthase/0.607
2pckSAHDiphthine synthase/0.601
2e8rSAHDiphthine synthase/0.598
2p5fSAHDiphthine synthase/0.595
2dekSAHDiphthine synthase/0.594
2dsiSAHDiphthine synthase/0.587
2e7rSAHDiphthine synthase/0.587
2e16SAHDiphthine synthase/0.584
2ek2SAHDiphthine synthase/0.584
2dxwSAHDiphthine synthase/0.579
2pcgSAHDiphthine synthase/0.578
2dsgSAHDiphthine synthase/0.577
1vceSAHDiphthine synthase/0.576
2ejkSAHDiphthine synthase/0.574
2e8qSAHDiphthine synthase/0.572
2dv7SAHDiphthine synthase/0.571
2eglSAHDiphthine synthase/0.570
2pchSAHDiphthine synthase/0.569
2p6kSAHDiphthine synthase/0.566
2pciSAHDiphthine synthase/0.566
2dv5SAHDiphthine synthase/0.565
2e8sSAHDiphthine synthase/0.565
2en5SAHDiphthine synthase/0.561
2huxSAHDiphthine synthase/0.561
2eldSAHDiphthine synthase/0.560
2ek3SAHDiphthine synthase/0.553
2owkSAHDiphthine synthase/0.551
2hr8SAHDiphthine synthase/0.549
2dxvSAHDiphthine synthase/0.545
2e15SAHDiphthine synthase/0.545
2egsSAHDiphthine synthase/0.543
2pb6SAHDiphthine synthase/0.541
2p6dSAHDiphthine synthase/0.536
2ek7SAHDiphthine synthase/0.528
2owfSAHDiphthine synthase/0.528
2ek4SAHDiphthine synthase/0.526
2pb4SAHDiphthine synthase/0.521
2hutSAHDiphthine synthase/0.517
2eleSAHDiphthine synthase/0.514
2emrSAHDiphthine synthase/0.509
2eh2SAHDiphthine synthase/0.504
2emuSAHDiphthine synthase/0.502
2ehlSAHDiphthine synthase/0.497
2ekaSAHDiphthine synthase/0.493
2eh5SAHDiphthine synthase/0.486
2pcmSAHDiphthine synthase/0.481
2ejzSAHDiphthine synthase/0.460
1lbcCYZGlutamate receptor 2/0.441
1xe55FEPlasmepsin-23.4.23.390.441
2givACOHistone acetyltransferase KAT8/0.440