Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2egbSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2egbSAHDiphthine synthase/1.000
2e08SAHDiphthine synthase/0.835
2egsSAHDiphthine synthase/0.834
2e7rSAHDiphthine synthase/0.757
2p5fSAHDiphthine synthase/0.742
2p2xSAHDiphthine synthase/0.739
2pcgSAHDiphthine synthase/0.731
2eleSAHDiphthine synthase/0.730
2ejkSAHDiphthine synthase/0.729
2dxvSAHDiphthine synthase/0.728
2ekaSAHDiphthine synthase/0.725
2ehlSAHDiphthine synthase/0.721
2p6dSAHDiphthine synthase/0.721
2p6iSAHDiphthine synthase/0.716
2dxwSAHDiphthine synthase/0.706
2eglSAHDiphthine synthase/0.699
2owuSAHDiphthine synthase/0.697
2eniSAHDiphthine synthase/0.695
2emrSAHDiphthine synthase/0.688
2owvSAHDiphthine synthase/0.687
2dshSAHDiphthine synthase/0.683
2dxxSAHDiphthine synthase/0.683
2p5cSAHDiphthine synthase/0.682
2e8hSAHDiphthine synthase/0.676
2pchSAHDiphthine synthase/0.676
2ed5SAHDiphthine synthase/0.671
2dv7SAHDiphthine synthase/0.668
2eh5SAHDiphthine synthase/0.664
2p6kSAHDiphthine synthase/0.659
2pckSAHDiphthine synthase/0.658
2owkSAHDiphthine synthase/0.657
2ejjSAHDiphthine synthase/0.656
1vceSAHDiphthine synthase/0.651
2ek7SAHDiphthine synthase/0.647
2el0SAHDiphthine synthase/0.647
2dekSAHDiphthine synthase/0.646
2eeqSAHDiphthine synthase/0.643
2hr8SAHDiphthine synthase/0.640
2pb5SAHDiphthine synthase/0.640
2pcmSAHDiphthine synthase/0.638
2e16SAHDiphthine synthase/0.635
2huqSAHDiphthine synthase/0.635
2e8sSAHDiphthine synthase/0.633
2e07SAHDiphthine synthase/0.630
2eh2SAHDiphthine synthase/0.625
2pciSAHDiphthine synthase/0.623
2eh4SAHDiphthine synthase/0.619
2emuSAHDiphthine synthase/0.618
2el3SAHDiphthine synthase/0.615
2dsiSAHDiphthine synthase/0.613
2owgSAHDiphthine synthase/0.613
2dv3SAHDiphthine synthase/0.612
2en5SAHDiphthine synthase/0.612
2ek3SAHDiphthine synthase/0.611
2p9dSAHDiphthine synthase/0.611
2eldSAHDiphthine synthase/0.607
2e8qSAHDiphthine synthase/0.603
2e8rSAHDiphthine synthase/0.603
2e15SAHDiphthine synthase/0.600
2pb4SAHDiphthine synthase/0.600
2dv5SAHDiphthine synthase/0.596
2dv4SAHDiphthine synthase/0.590
2ed3SAHDiphthine synthase/0.584
2pcaSAHDiphthine synthase/0.582
2huvSAHDiphthine synthase/0.577
2owfSAHDiphthine synthase/0.572
2hutSAHDiphthine synthase/0.570
2dsgSAHDiphthine synthase/0.566
1wngSAHDiphthine synthase/0.564
2z6rSAHDiphthine synthase/0.564
2p6lSAHDiphthine synthase/0.561
2e4nSAHDiphthine synthase/0.550
2ek4SAHDiphthine synthase/0.549
2e17SAHDiphthine synthase/0.542
2pb6SAHDiphthine synthase/0.539
2huxSAHDiphthine synthase/0.537
2ek2SAHDiphthine synthase/0.523
2ejzSAHDiphthine synthase/0.515
2qs3UBEGlutamate receptor ionotropic, kainate 1/0.454
2ojtUBAGlutamate receptor ionotropic, kainate 1/0.452
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.451
2y1tDUDSPBc2 prophage-derived deoxyuridine 5'-triphosphate nucleotidohydrolase YosS3.6.1.230.447
1xe55FEPlasmepsin-23.4.23.390.443
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.442
4bfzZVZPantothenate kinase2.7.1.330.442