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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2eeqSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2eeqSAHDiphthine synthase/1.000
2dsiSAHDiphthine synthase/0.793
2pb5SAHDiphthine synthase/0.705
2p6kSAHDiphthine synthase/0.690
2p5cSAHDiphthine synthase/0.681
2dshSAHDiphthine synthase/0.680
2owuSAHDiphthine synthase/0.670
2p6iSAHDiphthine synthase/0.597
2e7rSAHDiphthine synthase/0.594
2e17SAHDiphthine synthase/0.593
2e8sSAHDiphthine synthase/0.593
2eniSAHDiphthine synthase/0.589
2p2xSAHDiphthine synthase/0.580
2e07SAHDiphthine synthase/0.576
2ed5SAHDiphthine synthase/0.570
2z6rSAHDiphthine synthase/0.569
2dv4SAHDiphthine synthase/0.565
2e08SAHDiphthine synthase/0.549
2e15SAHDiphthine synthase/0.540
2pckSAHDiphthine synthase/0.533
2dv7SAHDiphthine synthase/0.531
2ek2SAHDiphthine synthase/0.531
2owkSAHDiphthine synthase/0.527
2ejkSAHDiphthine synthase/0.526
2e8hSAHDiphthine synthase/0.525
2ejjSAHDiphthine synthase/0.523
2dxxSAHDiphthine synthase/0.520
2dv5SAHDiphthine synthase/0.519
1wngSAHDiphthine synthase/0.518
2ed3SAHDiphthine synthase/0.517
2p5fSAHDiphthine synthase/0.512
2dsgSAHDiphthine synthase/0.507
2egbSAHDiphthine synthase/0.505
2e4nSAHDiphthine synthase/0.504
2egsSAHDiphthine synthase/0.504
2ek3SAHDiphthine synthase/0.502
2owvSAHDiphthine synthase/0.501
2eh4SAHDiphthine synthase/0.500
2el0SAHDiphthine synthase/0.499
2hutSAHDiphthine synthase/0.498
2dxwSAHDiphthine synthase/0.496
1vceSAHDiphthine synthase/0.493
2ejzSAHDiphthine synthase/0.492
2huqSAHDiphthine synthase/0.491
2huvSAHDiphthine synthase/0.487
2owgSAHDiphthine synthase/0.487
2p6dSAHDiphthine synthase/0.486
2dekSAHDiphthine synthase/0.483
2dxvSAHDiphthine synthase/0.483
2eh2SAHDiphthine synthase/0.478
2ehlSAHDiphthine synthase/0.478
2pciSAHDiphthine synthase/0.478
2p6lSAHDiphthine synthase/0.473
2p9dSAHDiphthine synthase/0.473
2eglSAHDiphthine synthase/0.472
2emrSAHDiphthine synthase/0.470
2emuSAHDiphthine synthase/0.468
2pb6SAHDiphthine synthase/0.466
2pcaSAHDiphthine synthase/0.462
2e8rSAHDiphthine synthase/0.460
2e16SAHDiphthine synthase/0.452
2eh5SAHDiphthine synthase/0.452
2el3SAHDiphthine synthase/0.451
2hr8SAHDiphthine synthase/0.446
2pcgSAHDiphthine synthase/0.444